PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G150000.2.p
Common NameGLYMA_09G150000, LOC100796473
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 274aa    MW: 31454.6 Da    PI: 8.4918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G150000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-13101153155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++ h+e+Er+RR+++ + ++ Lr+llP  +   ++K s ++   +Av+YIk++q
  Glyma.09G150000.2.p 101 KKMIHKEIERQRRQEMATFYASLRSLLPLEF--IKGKRSISDHMNEAVNYIKHMQ 153
                          5788*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1399171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.503100152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-9100154No hitNo description
PfamPF000108.5E-11101153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10102172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-6106158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MNLLPSAPIS KVDDSLEHSL SFESTMFPLQ RGNELVIQFS NSPHHHLQHK MSQDLILDDY  60
ASLDVNDSNQ KFSTSSISQP TKKLFYGANK KNHDYSNEHK KKMIHKEIER QRRQEMATFY  120
ASLRSLLPLE FIKGKRSISD HMNEAVNYIK HMQKHIKELG AKRDELKKLS NHSNNMENNH  180
EGLHTSCNFT VHEKNGIMGI EITSVFREEK PKISKLLQFL TEEGLEVVSF FSTEVNGRLL  240
HSVQCEVNHS NSVDPSELRK KVSKAFSTFR CSD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.172410.0hypocotyl| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G150000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150443e-98AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534029.20.0transcription factor bHLH118
TrEMBLI1L3H60.0I1L3H6_SOYBN; Uncharacterized protein
STRINGGLYMA09G27630.60.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.16e-34bHLH family protein