PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G158400.1.p
Common NameGLYMA_09G158400, LOC102661431
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 135aa    MW: 15249.5 Da    PI: 7.6078
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G158400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB361.7e-111271743
                NF-YB 17 mkkvlPanakiskdaketvqecvsefi 43
                         mkk+lP+n+ki+kdaketvqec sef+
  Glyma.09G158400.1.p  1 MKKALPTNGKIAKDAKETVQECLSEFL 27
                         9*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-8127IPR009072Histone-fold
PfamPF008082.8E-6128IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MKKALPTNGK IAKDAKETVQ ECLSEFLRST FQTHVLRWMD YIQHKQEFVG LFEKILLQKP  60
GFEPPVTHPV GVVEADLKSN NTEQSVKNVS KSEVDSSKDK NKVEGEDLTF NMSLKVGNMS  120
LVVALEQYIS FFQR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.611181e-103hypocotyl| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G158400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941474e-77BT094147.1 Soybean clone JCVI-FLGm-18A24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587400.11e-95nuclear transcription factor Y subunit B-2 isoform X1
TrEMBLA0A0R0I9593e-94A0A0R0I959_SOYBN; Uncharacterized protein
STRINGGLYMA06G14760.12e-39(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.62e-10nuclear factor Y, subunit B1