PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G170500.1.p
Common NameGLYMA_09G170500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 230aa    MW: 25412.6 Da    PI: 8.9301
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G170500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.29.6e-2958113258
          ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                          +++ Y+eCl+NhAaslG++a+DGCgEf+ +  ++ ++ +l+CaACgCHRnFHR+ + 
  Glyma.09G170500.1.p  58 SNYLYRECLRNHAASLGSYATDGCGEFTLD-VDSVSSPSLQCAACGCHRNFHRKVTC 113
                          6789*************************9.5557999****************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.7E-2560112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-2462110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2362110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.32462111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.57E-15143212IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-27145213IPR009057Homeodomain-like
TIGRFAMsTIGR015659.2E-29153211IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSILVTLHIN VHTIHQINIL KPTLHYTTLH PLSHSHKTTQ ERKKERHMEN SSSSSSCSNY  60
LYRECLRNHA ASLGSYATDG CGEFTLDVDS VSSPSLQCAA CGCHRNFHRK VTCPAVEGGL  120
QAVTGGSGDM MEYSGGGDVG RITEMGERSG GSKKRFRTKF SAEQKEKMLG FAEKLGWKLQ  180
RKEVDDEIER FCKSVGVTRQ VFKVWMHNHK NNSNTSTNSS ANLSSLTQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-211542161879ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.320790.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G170500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6957290.0AY695729.1 Glycine max zinc finger homeodomain protein SZF-HD1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237542.11e-134zinc finger homeodomain protein SZF-HD1
RefseqXP_028180210.11e-134zinc-finger homeodomain protein 10-like
SwissprotQ9M9S05e-41ZHD4_ARATH; Zinc-finger homeodomain protein 4
SwissprotQ9SB612e-41ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A445J2321e-171A0A445J232_GLYSO; Zinc-finger homeodomain protein 2
TrEMBLK7LEE91e-171K7LEE9_SOYBN; Uncharacterized protein
STRINGGLYMA09G30061.11e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-42homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]