PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G171100.2.p
Common NameGLYMA_09G171100, LOC100814432
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 356aa    MW: 39627.7 Da    PI: 7.5272
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G171100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.9e-32234287255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Glyma.09G171100.2.p 234 PRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 287
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.96E-16231288IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-29232288IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-24234287IPR006447Myb domain, plants
PfamPF002492.4E-7235286IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MPQNKIFHDQ QSSNPIPDLS LHISLPNSAP SSICTEGDSP FDAEGFKSHS DGSIKGCSSP  60
YHTDTQLSLA NPTNTTSTPS EAESTWRKRN FVRLVAEGQI RLINGIPLYS NLSSLDTIPS  120
IERNQPTNKF SFSSLYAFPH PPSAPNYGNN NGVVGGVAVE PISRFREIRT MESSSLRPQQ  180
FQYFDYPHQH QHHHQQQQFG SSNNIGASDF SSNGFVRSRM FSRQQSNKRN MRAPRMRWTS  240
SLHNRFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKN TDKPAASSDG  300
DEDFMSLTVP NDQNNSFLPN QRGTSNASID NDMGYTSSNL WVNSSSRIEL ASDQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-17235289458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-17235289458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-17235289357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-17235289357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-17235289357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-17235289357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-17235289458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-17235289458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-17235289458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-17235289458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-17235289458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-17235289458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.291750.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G171100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150443e-65AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587457.10.0transcription repressor KAN1 isoform X3
RefseqXP_028248240.10.0transcription repressor KAN1-like isoform X3
TrEMBLA0A0R0IH470.0A0A0R0IH47_SOYBN; Uncharacterized protein
TrEMBLA0A445J2460.0A0A445J246_GLYSO; Putative transcription factor RL9 isoform B
STRINGGLYMA09G30140.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.12e-43G2-like family protein