PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G184100.2.p
Common NameGLYMA_09G184100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 303aa    MW: 34085.4 Da    PI: 8.3038
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G184100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.19.5e-5551311129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL++kv++++++  ++i+ vd+ k+ePwdLp k++ ++kewyfFs rd+ky+tg r+nrat+sgyWk+tgkdk
  Glyma.09G184100.2.p   5 LPPGFRFHPTDEELITCYLTRKVSDSSFTS-KAIAVVDLKKSEPWDLPGKASMGKKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDK 93 
                          79*************************999.88***************9888999*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++  g lvg+kktLvfy+grap+gek++Wvmheyrle
  Glyma.09G184100.2.p  94 EIFR-AGVLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLE 131
                          ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-633151IPR003441NAC domain
PROSITE profilePS5100559.8195151IPR003441NAC domain
PfamPF023655.8E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT CYLTRKVSDS SFTSKAIAVV DLKKSEPWDL PGKASMGKKE  60
WYFFSLRDRK YPTGLRTNRA TESGYWKTTG KDKEIFRAGV LVGMKKTLVF YRGRAPRGEK  120
SNWVMHEYRL ENKNHFRPSK DEWVVCRVFQ KSLQMKRPQQ TPPSQPESPC DTASMVNEFG  180
DVELPNLINN IANSSSDGIT NNISGQTFFN ADLINSVNTN MNLTMNWPVA SEALQLRSYQ  240
QIEAAAAAAT DHLIASYMPQ GVSQHVGTNL ISSSLTASSS SKVLECVPQQ QQEQPFNLDS  300
IW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-56415116165NO APICAL MERISTEM PROTEIN
1ut4_B3e-56415116165NO APICAL MERISTEM PROTEIN
1ut7_A3e-56415116165NO APICAL MERISTEM PROTEIN
1ut7_B3e-56415116165NO APICAL MERISTEM PROTEIN
3swm_A3e-56415119168NAC domain-containing protein 19
3swm_B3e-56415119168NAC domain-containing protein 19
3swm_C3e-56415119168NAC domain-containing protein 19
3swm_D3e-56415119168NAC domain-containing protein 19
3swp_A3e-56415119168NAC domain-containing protein 19
3swp_B3e-56415119168NAC domain-containing protein 19
3swp_C3e-56415119168NAC domain-containing protein 19
3swp_D3e-56415119168NAC domain-containing protein 19
4dul_A3e-56415116165NAC domain-containing protein 19
4dul_B3e-56415116165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.202220.0root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G184100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028180135.10.0NAC domain-containing protein 100-like isoform X2
SwissprotQ9FLJ23e-80NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0R0IA300.0A0A0R0IA30_SOYBN; Uncharacterized protein
STRINGGLYMA09G31650.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-103NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]