PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G184600.3.p
Common NameCOL23, GLYMA_09G184600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 431aa    MW: 48194.7 Da    PI: 4.5928
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G184600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.5e-071661342
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         +r C+ + + +++++C  ++ +lC+ C    H+       H++v+l
  Glyma.09G184600.3.p 16 ARACESCLKVRARWYCAADDAFLCHGCDNMVHSAnqlasrHERVKL 61
                         578******99*********************66889999998875 PP
2CCT691.2e-23369411143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+
  Glyma.09G184600.3.p 369 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKS 411
                          9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.8E-71461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.1111461IPR000315B-box-type zinc finger
PfamPF006431.9E-51661IPR000315B-box-type zinc finger
CDDcd000212.05E-61761No hitNo description
PfamPF062032.9E-18369411IPR010402CCT domain
PROSITE profilePS5101716.023369411IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MTNEMKEASA LGARTARACE SCLKVRARWY CAADDAFLCH GCDNMVHSAN QLASRHERVK  60
LQTASSKVNY SVTPKVAWHS GFTRKARTPR SNNKHSSLQQ QQQKPLHEEQ GEEEEVFFNN  120
TIISVQPLVP ELGSEEPLLN DETEEQLLCR VPVFDAELCS IYNEVKDEVN VAGGEVAFDL  180
ENFSSEFLPT DMDLAEFSAD VESLLGNGVD EDSPVKKGSE LVLLDCKEEG DDEMDACVNG  240
IGANKDAMVK VKDEEELDAD DDTACHLDSI LDMNSEAFNW NIAESESPAQ AQEDEVSKVG  300
TNKKDIFLRL NYEEVITAWA SQGSPWTTGT PPKFFNSDDC WLDLGSNGGG VQCYYGEVRS  360
LRVHADGGRE ARVSRYREKR RTRLFAKKIR YEVRKLNAEK RPRMKGRFVK SVPLLEPLLC  420
QLNYQSSPLT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379395RRTRLFAKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.572000.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G184600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0689050.0HM068905.1 Glycine max CONSTANS-like zinc finger protein (COL23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239992.20.0CONSTANS-like zinc finger protein
RefseqXP_028239840.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A445J2N90.0A0A445J2N9_GLYSO; Zinc finger protein CONSTANS-LIKE 16 isoform A
TrEMBLK7M1Z60.0K7M1Z6_SOYBN; CONSTANS-like zinc finger protein
STRINGGLYMA13G33420.40.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-86B-box type zinc finger protein with CCT domain