PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G194300.1.p
Common NameGLYMA_09G194300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 178aa    MW: 20401 Da    PI: 5.9403
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G194300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.1e-10971523083
                          ..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3  30 keesktltledesgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFk 83 
                           + ++ + ++d++g ++e+ l+   k+s + yvl +GW +F+++++L e+D++ ++
  Glyma.09G194300.1.p  97 VRDGIPVNVYDKHGHEFEMMLKKfHKGSISyYVLNRGWLSFCNQQHLGENDIIALR 152
                          35667899*************6556666667*********************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.01E-890167No hitNo description
SuperFamilySSF1019369.22E-995162IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-796156IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-899153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MTENSSSNSG KGKNIIDEQQ HEESGKSEEG NNNRLVNEIL SYNESQLKFL LNVGIVKDCE  60
LSMPYITQLT SDKWNLFLRT PQFEGIFLGF LKEGEDVRDG IPVNVYDKHG HEFEMMLKKF  120
HKGSISYYVL NRGWLSFCNQ QHLGENDIIA LRTFRHAITD KLSFVVTYSN LVEFGRI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G194300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152898.11e-61hypothetical protein PHAVU_004G169400g
TrEMBLA0A0R0IAI71e-128A0A0R0IAI7_SOYBN; Uncharacterized protein
STRINGXP_007152898.15e-61(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2134023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-06B3 family protein