PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G201700.1.p
Common NameGLYMA_09G201700, LOC100778427
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25505.2 Da    PI: 7.5022
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G201700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.6e-27959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +ri+n++ rqvtfskRr+g++KKA+EL +LCda+v ++ifsstgklyey+s
  Glyma.09G201700.1.p  9 ERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYAS 59
                         69***********************************************86 PP
2K-box76.28.7e-2679170798
                K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                          + + e++ + +q+e++ L ++++nLq+++R+l+Ge+L  L++++Lq Le+qLe sl+ +R kK+++l+++i+el +k + + +en +L k
  Glyma.09G201700.1.p  79 QMNPESEVKFWQREAEILTQQLQNLQENHRQLMGEQLYGLTVRNLQDLENQLELSLQGVRMKKEQILKDEIQELNRKGNLIFQENVELYK 168
                          3378999*********************************************************************************99 PP

                K-box  97 kl 98 
                          k+
  Glyma.09G201700.1.p 169 KV 170
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.992161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-38160IPR002100Transcription factor, MADS-box
CDDcd002653.01E-44277No hitNo description
SuperFamilySSF554554.58E-33292IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-273859IPR002100Transcription factor, MADS-box
PfamPF014868.4E-2482170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.43886177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGKIVIER IDNSTSRQVT FSKRRKGLIK KAKELAILCD AQVGLVIFSS TGKLYEYAST  60
SMKSLIERYN TCKEEHHHQM NPESEVKFWQ REAEILTQQL QNLQENHRQL MGEQLYGLTV  120
RNLQDLENQL ELSLQGVRMK KEQILKDEIQ ELNRKGNLIF QENVELYKKV FGTTDMATTS  180
RNAFIPLSYG MHVGGNPQEL VQLQLCQPEQ EVCETLDTAT K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-22183183MEF2C
5f28_B3e-22183183MEF2C
5f28_C3e-22183183MEF2C
5f28_D3e-22183183MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Primarily expressed during lateral root formation and embryogenesis. {ECO:0000269|PubMed:11855641}.
UniprotTISSUE SPECIFICITY: Specifically expressed in root. {ECO:0000269|PubMed:11855641}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G201700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1482331e-149BT148233.1 Lotus japonicus clone JCVI-FLLj-16L15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534252.11e-164MADS-box transcription factor 23
RefseqXP_006587584.11e-164MADS-box transcription factor 23
RefseqXP_028248468.11e-164MADS-box transcription factor 23-like isoform X1
RefseqXP_028248469.11e-164MADS-box transcription factor 23-like isoform X1
SwissprotQ9SZJ68e-87AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLK7LF061e-162K7LF06_SOYBN; Uncharacterized protein
STRINGGLYMA09G33451.11e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.14e-89AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]