PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G217000.1.p
Common NameGLYMA_09G217000, LOC100777004
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family BES1
Protein Properties Length: 655aa    MW: 74123.4 Da    PI: 6.2385
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G217000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822160.31.2e-49511941140
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 
                          +g+g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvv++DGttyr+ + p+   +++gs+a +s+
  Glyma.09G217000.1.p  51 AGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQ-CPPP---SHMGSFAARSV 136
                          5899******************************************************************5.4444...69********* PP

               DUF822  91 esslq.sslkssalaspvesysaspksssfpspssldsislasa.......asllpvl 140
                          es+l+  sl++++++  +e++ ++++ ++ +sp+s+ds+ +a+        ++ +p+ 
  Glyma.09G217000.1.p 137 ESQLSgGSLRNCSVKETIENQTSVLRIDECLSPASIDSVVIAERdsktekyTNASPIN 194
                          *****9***********************************98865555554444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.2E-5052199IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.26E-159217651IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.5E-173220650IPR013781Glycoside hydrolase, catalytic domain
PfamPF013737.3E-88240621IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.7E-58257271IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.7E-58278296IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.7E-58300321IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.7E-58393415IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.7E-58466485IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.7E-58500516IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.7E-58517528IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.7E-58535558IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.7E-58573595IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MKSVNDDAST QDLDPQSDHS SDYLAHPQPH PQPRRPRGFA AAAAAATTNS AGKGKKEREK  60
EKERTKLRER HRRAITSRML AGLRQYGNFP LPARADMNDV LAALAREAGW VVDADGTTYR  120
QCPPPSHMGS FAARSVESQL SGGSLRNCSV KETIENQTSV LRIDECLSPA SIDSVVIAER  180
DSKTEKYTNA SPINTVDCLE ADQLMQDIHS GVHENNFTGT PYVPVYVKLP AGIINKFCQL  240
IDPEGIKQEL IHIKSLNVDG VVVDCWWGIV EGWSSQKYVW SGYRELFNII REFKLKLQVV  300
MAFHECGGND SSDALISLPQ WVLDIGKDNQ DIFFTDREGR RNTECLSWGI DKERVLKGRT  360
GIEVYFDMMR SFRTEFDDLF AEGLISAVEV GLGASGELKY PSFSERMGWR YPGIGEFQCY  420
DKYLQHSLRR AAKLRGHSFW ARGPDNAGHY NSMPHETGFF CERGDYDNYY GRFFLHWYSQ  480
TLIDHADNVL SLATLAFEET KITVKVPAVY WWYKTPSHAA ELTAGYHNPT NQDGYSPVFE  540
VLRKHAVTMK FVCLGFHLSS QEANESLIDP EGLSWQVLNS AWDRGLMAAG ENALLCYDRE  600
GYKKLVEIAK PRNDPDRRHF SFFVYQQPSL LQTNVCWSEL DFFVKCMHGE MTDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12822261211401Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.209120.0leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G217000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1739600.0AC173960.15 Glycine max cultivar Williams 82 clone gmw1-45c9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534334.10.0beta-amylase 8
RefseqXP_028247478.10.0beta-amylase 8-like
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A445J4B90.0A0A445J4B9_GLYSO; Beta-amylase
TrEMBLI1L5A70.0I1L5A7_SOYBN; Beta-amylase
STRINGGLYMA09G35070.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Representative plantOGRP97651112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]