PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G233600.1.p
Common NameGLYMA_09G233600, LOC100775746
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 360aa    MW: 41277 Da    PI: 7.9578
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G233600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-5391381129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeel+++yLkkkv+ +k+++ +vi+evd++k+ePwdL++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg
  Glyma.09G233600.1.p   9 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-DVIREVDLNKMEPWDLQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATG 97 
                          69****************************.99**************963433332556******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          +dk + + + +++g++ktLvfykgrap+g+ktdW+mheyrle
  Glyma.09G233600.1.p  98 RDKCIRN-SFKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 138
                          ******9.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-608160IPR003441NAC domain
PROSITE profilePS5100558.0189160IPR003441NAC domain
PfamPF023655.5E-2810137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGSSTNGGVP PGFRFHPTDE ELLHYYLKKK VSFQKFDMDV IREVDLNKME PWDLQERCRI  60
GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNSFKKIG MRKTLVFYKG  120
RAPHGQKTDW IMHEYRLEDG NDPQGSANED GWVVCRVFKK KNLFKIENEG GSTHKPDHQI  180
NNSSNTNARS YRENHYLLHQ QQNPRNSSGL ELDKPELALH YPPPHLQNPP YSLFQSQPLL  240
QTQKPMVYDY SYTSDTPIMA KQLMTNPRDC ESGSDGLRYQ VSESGMEVGS CEPNQEMGTG  300
RGEGINEWGV LDRLVTSHLA GNEDSSKGVR FEEANPQSVH QINQLSLRGE MDFWAYGKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-53516213167NO APICAL MERISTEM PROTEIN
1ut4_B3e-53516213167NO APICAL MERISTEM PROTEIN
1ut7_A3e-53516213167NO APICAL MERISTEM PROTEIN
1ut7_B3e-53516213167NO APICAL MERISTEM PROTEIN
3swm_A3e-53516216170NAC domain-containing protein 19
3swm_B3e-53516216170NAC domain-containing protein 19
3swm_C3e-53516216170NAC domain-containing protein 19
3swm_D3e-53516216170NAC domain-containing protein 19
3swp_A3e-53516216170NAC domain-containing protein 19
3swp_B3e-53516216170NAC domain-containing protein 19
3swp_C3e-53516216170NAC domain-containing protein 19
3swp_D3e-53516216170NAC domain-containing protein 19
4dul_A3e-53516213167NAC domain-containing protein 19
4dul_B3e-53516213167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}.
UniprotTISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G233600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-128AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533525.10.0protein BEARSKIN2
RefseqXP_028180478.10.0protein BEARSKIN2-like
SwissprotQ9SV871e-148BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A0R0IIZ50.0A0A0R0IIZ5_SOYBN; Uncharacterized protein
TrEMBLA0A445J5740.0A0A445J574_GLYSO; Protein BEARSKIN2
STRINGGLYMA09G36820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-151NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]