PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G233800.1.p
Common NameGLYMA_09G233800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 202aa    MW: 22639.8 Da    PI: 10.0666
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G233800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-1752101255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GVr ++ +gr+v+eIr p   g+++r++lg+fg++e+Aa+a++ a+  l+g
  Glyma.09G233800.1.p  52 AFRGVRKRS-WGRYVSEIRLP---GQKTRIWLGSFGSPEMAARAYDSAAFFLKG 101
                          58****888.**********8...557**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-1951110IPR016177DNA-binding domain
CDDcd000181.98E-2851111No hitNo description
PROSITE profilePS5103220.652109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-2852110IPR001471AP2/ERF domain
SMARTSM003806.8E-3252115IPR001471AP2/ERF domain
PfamPF008478.6E-1153101IPR001471AP2/ERF domain
PRINTSPR003679.0E-115364IPR001471AP2/ERF domain
PRINTSPR003679.0E-1191111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MWHKIQWEPQ RYSVEDSGVH KPPSTRLKPQ LLIRVLLMCS ISEKAKRKRQ SAFRGVRKRS  60
WGRYVSEIRL PGQKTRIWLG SFGSPEMAAR AYDSAAFFLK GTSATLNFPD LVHSLPRPLS  120
SSRRDIQSAA AEAALHSPPP KEEQESIFTS TTTSSFHDVM EAPLMSPLRV DSTFGDFSWD  180
QLFDFNDDIL IVGSTSATLV P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-1553114668ATERF1
3gcc_A9e-1553114668ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.373490.0cotyledon| flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G233800.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534428.21e-114dehydration-responsive element-binding protein 3
RefseqXP_028181557.11e-114dehydration-responsive element-binding protein 3-like
TrEMBLK7LFN01e-145K7LFN0_SOYBN; Uncharacterized protein
STRINGGLYMA09G36840.21e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-27ERF family protein