PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G235300.1.p
Common NameGLYMA_09G235300, LOC100781091
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 236aa    MW: 26814.3 Da    PI: 8.7968
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G235300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-16956148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++ Ed+ll  +v+++G g W++++++ g++R++k+c++rw++yl
  Glyma.09G235300.1.p  9 KGAWSKCEDDLLRACVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 56
                         79********************************************97 PP
2Myb_DNA-binding45.71.5e-1462107148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++++E +  ++ +k+lG++ W++Ia +++ gRt +++k++w++y+
  Glyma.09G235300.1.p  62 RGDFSEDEVDMMIRMHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNTYM 107
                          899*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.767156IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-21659IPR009057Homeodomain-like
SuperFamilySSF466893.83E-277103IPR009057Homeodomain-like
SMARTSM007175.7E-13858IPR001005SANT/Myb domain
PfamPF002495.4E-15956IPR001005SANT/Myb domain
CDDcd001672.43E-81156No hitNo description
PROSITE profilePS5129424.15557111IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-2360111IPR009057Homeodomain-like
SMARTSM007176.7E-1461109IPR001005SANT/Myb domain
PfamPF002497.6E-1362106IPR001005SANT/Myb domain
CDDcd001675.24E-965107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEGPSSVRKG AWSKCEDDLL RACVQLYGEG KWHLVPQRAG LNRCRKSCRL RWLNYLKPNI  60
KRGDFSEDEV DMMIRMHKLL GNRWSLIAGR LPGRTSNDVK NYWNTYMRRK VYSHKKDNNV  120
EKQADEAKST VQRHQVIKPI PRALTKTAPR LQGKLFNSSK VGVSEAAGAA SSGSGNWWET  180
LLENKKDNHE GNIINNTCFF GGADGELDLW DEELNPIACD FLSEGENWSD FLLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2431111108B-MYB
1gv2_A1e-2491114105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G235300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587741.21e-176transcription factor MYB90
RefseqXP_028248183.11e-176transcription factor MYB90-like
SwissprotQ9FNV95e-56MY113_ARATH; Transcription factor MYB113
TrEMBLA0A445J5B51e-174A0A445J5B5_GLYSO; Transcription factor MYB113
TrEMBLK7LFP31e-174K7LFP3_SOYBN; Uncharacterized protein
STRINGGLYMA09G37010.21e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-58myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]