PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G245300.1.p

Common Name

GLYMA_09G245300, LOC102665993

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 323aa MW: 36039.6 Da PI: 10.2142

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G245300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.7	4.1e-20	35	109	1	70
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekk 70 +Wt +e+ aLi+a+r+++ +l+r++lk+++W+ev++ + + + ++p+qC++k+e+l+kry+ + ++ ++ Glyma.09G245300.1.p 35 CWTPEETSALIDAYRDKWYSLGRTNLKATHWQEVADSVtaqcpNASPTAKTPVQCRHKMEKLRKRYRTEIQRLRN 109 8****************************************9*********************99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.0E-19	34	135	No hit	No description
PROSITE profile	PS50090	6.295	36	97	IPR017877	Myb-like domain
SMART	SM00595	1.3E-7	43	140	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MASPSSPTDS NPPSALPLPI PPPPSTSSRR LPPPCWTPEE TSALIDAYRD KWYSLGRTNL 60 KATHWQEVAD SVTAQCPNAS PTAKTPVQCR HKMEKLRKRY RTEIQRLRNL PLPRLNNAST 120 NSPSSWLHFK SMDSMEKGPN HKPHADNNLN INNNFHDDDV DDDDLYEEFK NAPGSNTRSL 180 NKLYKNNNGF NSAGSGSGSG FRIRIPAGVP QQQHHTASSN KIFNSHPPPG MGPRGGGVKR 240 ERERDAVAEM VGAIKVLRDG FVRMEQMKME MAREIESMRM EMEMKRTEMI LDSQQRIVEA 300 FARAVSQKRT KGKSTPSPSS QP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.7038	0.0	cotyledon\| hypocotyl\| leaf\| root\| somatic embryo\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G245300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-125	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006588330.1	0.0	trihelix transcription factor ASIL2
Refseq	XP_028181564.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	A0A445J5K5	0.0	A0A445J5K5_GLYSO; Protein FIP2
TrEMBL	I1L649	0.0	I1L649_SOYBN; Uncharacterized protein
STRING	GLYMA09G38050.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38
Representative plant	OGRP4059	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-42	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Glyma.09G245300.1.p
Entrez Gene	102665993