PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G254800.1.p
Common NameGLYMA_09G254800, LOC100798084
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 349aa    MW: 37741.6 Da    PI: 5.9406
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G254800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.5e-31157215259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp+++++tY+ eHnh+
  Glyma.09G254800.1.p 157 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPTMFIVTYTAEHNHP 215
                          79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30149217IPR003657WRKY domain
PROSITE profilePS5081134.67151217IPR003657WRKY domain
SuperFamilySSF1182905.23E-26154217IPR003657WRKY domain
SMARTSM007741.4E-36156216IPR003657WRKY domain
PfamPF031061.0E-25158215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAEDWDLHAV VRGCSTVTSS SVSSSSSSSS GFASCYFHPE AAASSSSSSG FNIFKGEQGI  60
SQALSLSAYP FEARSSIEEL HELCKPFFSK SQPLTLQASS PLSSLSSYSS APPKSVSTQE  120
KQQQRSKQPH AVTTPRSKRR KNQLKKVCQV PVENLSSDIW AWRKYGQKPI KGSPYPRGYY  180
RCSSSKGCLA RKQVERNRSD PTMFIVTYTA EHNHPAPTHR NSLAGSTRQK PLAPQTATTT  240
EEDSEKSKSF TKPTSPATSG AEEEAPTPPQ GEKSESREEK EDVMDDEEED EFGLSDMVLS  300
DDFFESLDEL SQLTAPSVVT GDCFSDPFSA IAIPSWVASG AATAGGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-22143218480Disease resistance protein RRS1
5w3x_D2e-22143218480Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.235560.0pod| seed coat| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G254800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932950.0BT093295.1 Soybean clone JCVI-FLGm-17I1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534539.10.0WRKY transcription factor 22
RefseqXP_028248358.10.0WRKY transcription factor 22-like
TrEMBLA0A445J6B00.0A0A445J6B0_GLYSO; WRKY transcription factor 22
TrEMBLI1L6F60.0I1L6F6_SOYBN; Uncharacterized protein
STRINGGLYMA09G39040.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-68WRKY family protein