PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G270000.1.p
Common NameGLYMA_09G270000, LOC100803919
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 824aa    MW: 89556.8 Da    PI: 6.5077
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G270000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.94.7e-1254578122374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lLl+cAeavs+++le a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y++lp +++s     ++++a+++f+ +sP++
  Glyma.09G270000.1.p 457 LTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQS----HKVASAFQVFNGISPFV 542
                          579*********************************************************999988885....89999************ PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+g+p +R+Tg+g     s e+le+tg+rL++fA++l +pfef + 
  Glyma.09G270000.1.p 543 KFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGAPYVRLTGLGT----SMEALEATGKRLSDFANKLCLPFEFFP- 627
                          **********************************************************....***************************. PP

                 GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          va+++ +l++e+L+v++ Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++ n++sFl rf+ea++yysalfdsl
  Glyma.09G270000.1.p 628 VAEKVGNLDPERLNVSKTEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLS-NTGSFLGRFVEAIHYYSALFDSL 710
                          7*************************9..999999999999....*******************97.699******************** PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                           +++++eseer++vE++ll+rei+nv+a  g +r+ + + +++Wre+l+++GF+ ++l  +aa+qa+lll +++s+gy++ e++g l lg
  Glyma.09G270000.1.p 711 GSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPK-FHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLG 799
                          *********************************998887.************************************************** PP

                 GRAS 362 WkdrpLvsvSaWr 374
                          Wkd  L+++SaWr
  Glyma.09G270000.1.p 800 WKDLCLLTASAWR 812
                          ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.652430792IPR005202Transcription factor GRAS
PfamPF035141.6E-122457812IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MAACALFSGG GNITEDGNVN GSGSANSTPL TSASNSSNMS NEEQQQLHAG GIMPQPYCER  60
KMMRKRMASE MEVNVHATPP HNSSSTTSDY PRFPRRSNTN TNMLEKGSPT TTSSTTTLAA  120
GTCNNNNNNN NNNNSHHYNN SNNSNSGNIS SRDNVAIPNY PTVTVTTNYS TMLLPSSLNS  180
SGVAPNYNST HQHHHFQGLV ESQDQQNSVP AVCGFSGLPL FPSQSQRNRD NIRNSGGNIV  240
DVVASSSPSP SMDDTSGAAT TSGWIDGILK DLIHSSNSVS IPQLISNVRE IIYPCNPNLA  300
MVLEYRLRLL LTESTTPQHK RGTEGVPLLP SVSSVKLMNN RVVDGIAPNL HFTDASGGAV  360
VVNQHMLSNW GVPQITPHHD NTNTNTNTNN NNNPSVSLVT LPSPAPPPHY SPPEEKNPQE  420
EDLAAATTTA HEVALSRKKK EELREQKKKD EEGLHLLTLL LQCAEAVSAE NLEDANKMLL  480
EISQLSTPFG TSAQRVAAYF SEAISARLVS SCLGIYATLP HTHQSHKVAS AFQVFNGISP  540
FVKFSHFTAN QAIQEAFERE ERVHIIDLDI MQGLQWPGLF HILASRPGGA PYVRLTGLGT  600
SMEALEATGK RLSDFANKLC LPFEFFPVAE KVGNLDPERL NVSKTEAVAV HWLQHSLYDV  660
TGSDTNTLWL LQRLAPKVVT VVEQDLSNTG SFLGRFVEAI HYYSALFDSL GSSYGEESEE  720
RHVVEQQLLS REIRNVLAVG GPSRTGEPKF HNWREKLQQC GFRGISLAGN AATQASLLLG  780
MFPSEGYTLV EDNGILKLGW KDLCLLTASA WRPPFHGAIT HHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04398133380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.608600.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apical meristem, leaf primordia, between the cortex and the differentiating vessels in lower shoots and in root endodermis. {ECO:0000269|PubMed:11333309}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G270000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533642.10.0protein SCARECROW
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLK7LGC30.0K7LGC3_SOYBN; Uncharacterized protein
STRINGGLYMA09G40620.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein