PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G274000.1.p

Common Name

GLYMA_09G274000, Glyma09g41050.1, LOC100805895

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 301aa MW: 34223.8 Da PI: 6.3483

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G274000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	80	2.5e-25	121	181	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqKe+ +++fpr+YYrCt++ gC+++k+v+r +e+p ++++tY g+H+++ Glyma.09G274000.1.p 121 DDGHHWRKYGQKEILNAKFPRNYYRCTHKfdqGCQATKQVQRVQEEPILFKTTYYGHHTCK 181 8*************************9999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.2E-26	108	182	IPR003657	WRKY domain
PROSITE profile	PS50811	20.346	115	178	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-24	118	181	IPR003657	WRKY domain
SMART	SM00774	1.4E-36	120	182	IPR003657	WRKY domain
Pfam	PF03106	1.1E-24	121	181	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MENLGGSSRR KAIEELLRGR DSAQQLKSVI NGTYDDGSAT PFAQQLVKEV LMSFTNSLLF 60 LHNNPTSESH HVFNVQVWDS PKSEDSQESN CKSSTIKEPR GCYKRRRTEQ TWEKESEAPI 120 DDGHHWRKYG QKEILNAKFP RNYYRCTHKF DQGCQATKQV QRVQEEPILF KTTYYGHHTC 180 KNSANPDIIL DPMSPSSSSK FLSFDNSFST PSKQECPFLS SSNNFPSSSS VKRECKEEVP 240 PSISSNDYLI SSDLTFDSSP RHHVTLSSTL DSEYKSVDIS DVLYDSAQLD FVFEPFLEIR 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	5e-21	120	181	8	69	OsWRKY45
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.31827	0.0	cotyledon\| flower\| hypocotyl\| leaf\| pod\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G274000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031236	0.0	KT031236.1 Glycine max clone HN_CCL_113 WRKY transcription factor (Glyma09g41050.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001302438.1	0.0	probable WRKY transcription factor 70-like
TrEMBL	I1L6Z7	0.0	I1L6Z7_SOYBN; WRKY transcription factor
STRING	GLYMA09G41050.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1995	34	86
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	2e-39	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	Glyma.09G274000.1.p
Entrez Gene	100805895

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]