PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G284300.1.p
Common NameGLYMA_09G284300, LOC100786264
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 241aa    MW: 25777.8 Da    PI: 9.6827
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G284300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.41.1e-37401982119
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg... 88 
                          a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as+++ ++++        +   
  Glyma.09G284300.1.p  40 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSTVSDHKPLL-----Pppt 124
                          78**************************************************************99999776222222222.....1233 PP

                  TCP  89 ..........................................................kaaksaakskksqksaasalnlakesrakar 119
                                                                                    +               +s+ + +++++++++
  Glyma.09G284300.1.p 125 pfilgkrirpdddsaakddavslvapptppalwalpprpdfgqvwsfaaapelvsvspQ---------------NSMFHHHHQHHQQQQ 198
                          33444444455555556666777777777788888888888865554444444444431...............333333333332222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.20946100IPR017887Transcription factor TCP subgroup
PfamPF036342.4E-3146118IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSNSDGATNA VPPNDANNNT IVEYQQRTTT TTTAAAAALA VKKPPSKDRH SKVDGRGRRI  60
RMPIICAARV FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGSGTTPASF STVSDHKPLL  120
PPPTPFILGK RIRPDDDSAA KDDAVSLVAP PTPPALWALP PRPDFGQVWS FAAAPELVSV  180
SPQNSMFHHH HQHHQQQQQQ AAMGEASAAR LGNYLPGHLN LLASLSGGHG NSGRRDDEPR  240
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.215400.0hypocotyl| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G284300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534684.11e-177transcription factor TCP7
RefseqXP_025979673.11e-177transcription factor TCP7
RefseqXP_028248094.11e-177transcription factor TCP7-like
RefseqXP_028248096.11e-177transcription factor TCP7-like
SwissprotQ9FMX25e-87TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A445J7G61e-175A0A445J7G6_GLYSO; Transcription factor TCP7
TrEMBLK7LGM51e-175K7LGM5_SOYBN; Uncharacterized protein
STRINGGLYMA09G42120.21e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Representative plantOGRP85141016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-74TCP family protein