PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G284500.1.p

Common Name

GLYMA_09G284500, LOC100795254

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 240aa MW: 25676.7 Da PI: 9.6827

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G284500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.3	1.1e-37	39	197	2	119
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg... 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as+++ ++++ + Glyma.09G284500.1.p 39 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSTVSDHKPLL-----Pppt 123 78**************************************************************99999776222222222.....1233 PP TCP 89 ..........................................................kaaksaakskksqksaasalnlakesrakar 119 + +s+ + +++++++++ Glyma.09G284500.1.p 124 pfilgkrirpdddsaakddavslvapptppalwalpprpdfgqvwsfaaapelvsvspQ---------------NSMFHHHHQHHQQQQ 197 33444444455555556666777777777788888888888865554444444444431...............333333333332222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	45	99	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.4E-31	45	117	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSNSDGATNA VPPNDANNNT IVEYQQRTTT TTAAAAALAV KKPPSKDRHS KVDGRGRRIR 60 MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GSGTTPASFS TVSDHKPLLP 120 PPTPFILGKR IRPDDDSAAK DDAVSLVAPP TPPALWALPP RPDFGQVWSF AAAPELVSVS 180 PQNSMFHHHH QHHQQQQQQA AMGEASAARL GNYLPGHLNL LASLSGGHGN SGRRDDEPR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.21540	0.0	hypocotyl\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G284500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003533698.1	1e-176	transcription factor TCP7
Refseq	XP_025979674.1	1e-176	transcription factor TCP7
Swissprot	Q9FMX2	6e-87	TCP7_ARATH; Transcription factor TCP7
TrEMBL	K7LGM6	1e-175	K7LGM6_SOYBN; Uncharacterized protein
STRING	GLYMA09G42140.2	1e-175	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53
Representative plant	OGRP8514	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-74	TCP family protein

Link Out ? help Back to Top
Phytozome	Glyma.09G284500.1.p
Entrez Gene	100795254