PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G020200.1.p
Common NameGLYMA_10G020200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 334aa    MW: 37413.1 Da    PI: 9.3067
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G020200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.3e-062747121
                         EEETTTTEEESSHHHHHHHHH CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                         ++C++C+k F r+ nL+ H r
  Glyma.10G020200.1.p 27 FVCEICNKGFQRNQNLQLHRR 47
                         89*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-52647IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.5982747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDEIHVTDPN AEVIALSPTT LMATNRFVCE ICNKGFQRNQ NLQLHRRGRN PPWKLRQRGS  60
NELMKKRVYV CPEPSCVHHN PARALGDSTG IKKITADNMV KRNGSVTNAL EDMLSNLTGR  120
PTRKHVALGN TNVIGEPYFP RRDSFITHRA FCDTLTEENN RQIELPDLIA TTVPLSTSSN  180
NTTVSEFNNN YDPKNPLQEH IVPLPFKSTS ARQHHCFQSL PRLQNNASAS SAHMSATALL  240
QKAAQMGATA SNNNNNNSII INSPTMMQKN FVISGMAGPH HNHNSSSYDH FHHPNPDQSH  300
MQFFHKGQQE MSLIFDSNNN DMRMFGTMFM GIK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G020200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-141AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575108.11e-132protein indeterminate-domain 2
TrEMBLA0A0R0HTD10.0A0A0R0HTD1_SOYBN; Uncharacterized protein
STRINGGLYMA10G02501.11e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.12e-54indeterminate(ID)-domain 11