PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G020600.1.p
Common NameGLYMA_10G020600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 448aa    MW: 48181.1 Da    PI: 8.5369
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G020600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-105075126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ++ ++C +++rtG C yG+rC+++H+
  Glyma.10G020600.1.p 50 PGVPNCVYYMRTGVCGYGGRCRYNHP 75
                         5789*********************8 PP
2zf-CCCH41.91.6e-1396121227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tGtCk+G++CkF+H++
  Glyma.10G020600.1.p  96 GEPPCQYYLKTGTCKFGASCKFHHPK 121
                          579*********************96 PP
3zf-CCCH38.91.5e-12143167327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+++++tG+CkyG +CkF+H++
  Glyma.10G020600.1.p 143 EKECSYYLKTGQCKYGISCKFHHPQ 167
                          679********************97 PP
4zf-CCCH36.21e-11292318127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C++++rtG Ck+G  C+++H++
  Glyma.10G020600.1.p 292 PGEPDCQYYLRTGDCKFGLACQYHHPQ 318
                          5789*********************97 PP
5zf-CCCH32.81.2e-10339361426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           +C f++++G+Ck+G++CkF H+
  Glyma.10G020600.1.p 339 QPCAFYLQNGHCKFGSTCKFDHS 361
                          69********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7744977IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-54976IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-85175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-65378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-45575IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.05194122IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-794121IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-1196121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-697122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-599120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.849140168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6141168IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5142167IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5146166IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436291319IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9293318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-5296319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896335363IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5335362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6338366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5339363IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-8339361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDLYGRGPAR NVHNPVNQPE WRSPGTDTGL EESMWHLTLG GGGESYPERP GVPNCVYYMR  60
TGVCGYGGRC RYNHPHDRAA VVAAVRVTGD YPERLGEPPC QYYLKTGTCK FGASCKFHHP  120
KNGGEYLSQA PLNVYGYPLR SDEKECSYYL KTGQCKYGIS CKFHHPQPAG TSLPASAAQF  180
YQQVQSPTVP LPEQYVGASS SLRVARPPIL PGSYVQGAYG PVFLSPGVVQ FPGWNHYSAL  240
PGTQPGVGAT SLYGVTQLSS PTSAFARPYT LLPSSTGLSG SNLKEQLYPK RPGEPDCQYY  300
LRTGDCKFGL ACQYHHPQDH VVAQPLLSPV GLPLRPGLQP CAFYLQNGHC KFGSTCKFDH  360
SLGSMRYSPS ASSLIDVPVT PYLVGSLLSQ LESFSARIPS SGNSSGTSVG LIFSQGGSVL  420
LSDVQLSSQS SAPTNSSRST RQSGEIR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.391340.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G020600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937450.0BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518955.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_028207352.10.0zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0R0HN520.0A0A0R0HN52_SOYBN; Uncharacterized protein
STRINGGLYMA10G02540.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-177C3H family protein