PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G026000.1.p
Common NameGLYMA_10G026000, LOC100807157
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 665aa    MW: 73580.9 Da    PI: 5.1377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G026000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-14463509455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Glyma.10G026000.1.p 463 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 509
                          7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-569191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-19461525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-19463524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-15463513No hitNo description
PfamPF000101.1E-11463508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-17465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MAAPLGTSLQ SMLQAAVQSV QWTYSLFWQL CPQQGILVWG DGYYNGAIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYESLS AGETNPPCRR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HLWLTGANEV DSKTFSRAIL AKSARIQTVV CIPLLDGVVE FGTMDKVQED  180
LSFIQHVETF FIDHLNPLPP KPALSEHSTS NPASSSEHIP AVMYTVVDPL AANPNLNDDM  240
DEDIEEEEEE EEEDEEPESG SEDKAGYGIA RQTPTPAMAA EPSELIQLEM PEDIRLGSPN  300
DGSNNLDSDF HLLAVSQGVN TAGQAESTRR WGLSQNPMQV QLPTSALHPL EDLTQEDTHY  360
SQTVSNILQN QFTRWPASPS SVGYVSYSTQ SAFAKWSSRA SHHHFHPAAA AAADGTSQCI  420
LKYILFTVPY LHAKNPGESS PQTTAADTKL RGKGAPQEEL SANHVLAERR RREKLNERFI  480
ILRSLVPFVT KMDKASILGD TIEYVKQLRR KIQELEARNR QMTEAEQRSK LPEIAVQRTS  540
SSSSKEQQRS GVTMTEKRKV RIVEGVVAKA KAVEAEATTS VQVSIIESDA LLEIECRHKE  600
GLLLDVMQML REVRIEVIGV QSSLNNGVFV AELRAKVKEH ANGKKVSIVE VKRALNQIIP  660
HAVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-2181918192Transcription factor MYC3
4rqw_B1e-2181918192Transcription factor MYC3
4rs9_A1e-2181918192Transcription factor MYC3
4yz6_A1e-2181918192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1467472ERRRRE
2468473RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G026000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588626.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLK7LH160.0K7LH16_SOYBN; Uncharacterized protein
STRINGGLYMA10G03140.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Representative plantOGRP52261116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-106bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]