PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G037000.1.p
Common NameGLYMA_10G037000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 238aa    MW: 26658.8 Da    PI: 7.0541
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G037000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.9e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEd++l++ ++ +G ++W++ ++  g+ R++k+c++rw +yl
  Glyma.10G037000.1.p 14 KGLWTQEEDLILIHHINTHGHKNWRALPKQAGLLRCGKSCRLRWINYL 61
                         678*****************************99************97 PP
2Myb_DNA-binding43.48.1e-1467106142
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 
                          rg++T eE++  +++++ lG++ W++Ia++++ gRt++++k+
  Glyma.10G037000.1.p  67 RGNFTREEEDMVIQLHETLGNR-WSAIAAKFP-GRTDNEIKN 106
                          89********************.*********.********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129422.048965IPR017930Myb domain
SuperFamilySSF466898.61E-2910106IPR009057Homeodomain-like
SMARTSM007172.5E-131363IPR001005SANT/Myb domain
PfamPF002491.9E-141461IPR001005SANT/Myb domain
CDDcd001672.35E-111761No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2165107IPR009057Homeodomain-like
SMARTSM007179.5E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129412.99866116IPR017930Myb domain
PfamPF002492.0E-1267106IPR001005SANT/Myb domain
CDDcd001671.09E-969107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGLWTQE EDLILIHHIN THGHKNWRAL PKQAGLLRCG KSCRLRWINY  60
LKPDIKRGNF TREEEDMVIQ LHETLGNRWS AIAAKFPGRT DNEIKNQKLS SLDTLNSKQQ  120
PVNLPTEEKK PLSPPQCVSS SMSTLTTSSD TTTNEHNSNH HHVPMMNNST TAPESLDDDF  180
WSQVLSADNN NSDATTSFPA TGAAADGKFQ GVHPSSVYNN VDYWFDVYMG AQEFPKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231211225124MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G037000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014618427.21e-159LOW QUALITY PROTEIN: transcription factor MYB30
RefseqXP_028182497.11e-160transcription factor MYB30-like
TrEMBLA0A0R0HNZ41e-179A0A0R0HNZ4_SOYBN; Uncharacterized protein
STRINGXP_007144899.11e-100(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2236644
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.19e-68myb domain protein 14