PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G045200.1.p
Common NameGLYMA_10G045200, LOC100795828
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 165aa    MW: 18666.1 Da    PI: 10.5276
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G045200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001182104123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg+ F+    L  H+++H
  Glyma.10G045200.1.p  82 HECTICGREFTLGQALGGHMKKH 104
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.8E-103761IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9933764IPR007087Zinc finger, C2H2
SuperFamilySSF576673.76E-737104No hitNo description
SMARTSM003550.373759IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-479104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.3E-1082105IPR007087Zinc finger, C2H2
PROSITE profilePS501579.78582104IPR007087Zinc finger, C2H2
SMARTSM003550.06182104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKRQRDGVES IDLVNCLMLL SHHREIKPQK LLGPEEFECM TCNRKFTSFQ ALGGHRASHK  60
KPKLHVKEQG KILMLGNKPK KHECTICGRE FTLGQALGGH MKKHRIAVDQ GFSLINEVVV  120
KVPFLKRSNS KRVLFLDLNL NLTPLQNDLK LLFGEKAPKV DSFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G045200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536960.11e-117zinc finger protein ZAT11
SwissprotQ9SLD42e-42ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLI1L8M21e-115I1L8M2_SOYBN; Uncharacterized protein
STRINGGLYMA10G05180.11e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-33C2H2 family protein