PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G045400.1.p
Common NameGLYMA_10G045400, LOC100778467
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 180aa    MW: 20039.2 Da    PI: 10.0455
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G045400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000974769123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ Fs+   L  H  +H
  Glyma.10G045400.1.p 47 FECKTCNRKFSSFQALGGHRASH 69
                         89**********99999998887 PP
2zf-C2H214.40.0001191113123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg+ Fs    L  H+r+H
  Glyma.10G045400.1.p  91 HECSICGMEFSLGQALGGHMRKH 113
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.194769IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.47E-947113No hitNo description
PfamPF139123.5E-114771IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3054774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-489115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.15991118IPR007087Zinc finger, C2H2
SMARTSM003550.05791113IPR015880Zinc finger, C2H2-like
PfamPF139124.4E-991115IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MVAILKRQGE NESEETIIGL AKSLMQLSRV QQQSNKPLLK TFSPTEFECK TCNRKFSSFQ  60
ALGGHRASHK KPKFEAEELK EEAKKTKPKM HECSICGMEF SLGQALGGHM RKHRGAISEN  120
DNNNEALSSI KQAIAKAPVL KRSNSKRVMC LEMDLNLTPL ENDLKLLFGN KAPRVDLSL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.45260.0flower| meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G045400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0916771e-155BT091677.1 Soybean clone JCVI-FLGm-8F13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537203.11e-129zinc finger protein ZAT11
TrEMBLI1L8M41e-127I1L8M4_SOYBN; Uncharacterized protein
STRINGGLYMA10G05210.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-38C2H2 family protein