PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G061400.1.p
Common NameGLYMA_10G061400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 92aa    MW: 10255.6 Da    PI: 10.7303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G061400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.7e-192271255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr ++ +gr+++eIrdps+   + r++lg+f+tae  a+a++aa+++++g
  Glyma.10G061400.1.p 22 HFRGVRKRP-WGRYASEIRDPSQ---KSRVWLGTFDTAEATARAYDAAAREFRG 71
                         69*******.**********964...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-382285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-322279IPR001471AP2/ERF domain
PROSITE profilePS5103222.9192279IPR001471AP2/ERF domain
PfamPF008478.3E-122271IPR001471AP2/ERF domain
CDDcd000183.70E-212279No hitNo description
SuperFamilySSF541714.18E-212280IPR016177DNA-binding domain
PRINTSPR003672.1E-102334IPR001471AP2/ERF domain
PRINTSPR003672.1E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MLDHTSALEV KTGGVKRELD VHFRGVRKRP WGRYASEIRD PSQKSRVWLG TFDTAEATAR  60
AYDAAAREFR GPKAKTNFPL PLENVKNLSP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-212280261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-212280564ATERF1
3gcc_A6e-212280564ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.349556e-94cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| root| stem
Gma.63806e-94cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| pod| root| seed coat| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269|PubMed:10945353}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G061400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2362101e-117AC236210.2 Glycine max clone GM_WBc0012G22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593630.13e-39ethylene-responsive transcription factor 4
SwissprotQ9LW495e-37ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A0R0HPZ11e-60A0A0R0HPZ1_SOYBN; Uncharacterized protein
STRINGGLYMA10G07005.18e-61(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-25erf domain protein 9