PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G076100.1.p
Common NameGLYMA_10G076100, LOC100795470
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 338aa    MW: 38494 Da    PI: 6.964
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G076100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.45.9e-3373178199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k ltpsdv+k++rlv+pk++ae++       gg++ ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F+
  Glyma.10G076100.1.p  73 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgdsGGSECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFE 162
                          99******************************988888999************************************************* PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                          +++ + ++l+++++r+
  Glyma.10G076100.1.p 163 RHRVDAQRLFIGWRRR 178
                          87779999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-4168183IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-3268180IPR015300DNA-binding pseudobarrel domain
CDDcd100173.17E-2971169No hitNo description
PROSITE profilePS5086313.98773179IPR003340B3 DNA binding domain
SMARTSM010194.5E-2673179IPR003340B3 DNA binding domain
PfamPF023625.6E-3073178IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSINHYSMDL PEPTLWWPHP HHQQQQLTLM DPDPLRLNLN SDDGNGNDND NDENQTTTTG  60
GEQEILDDKE PMFEKPLTPS DVGKLNRLVI PKQHAEKYFP LSGDSGGSEC KGLLLSFEDE  120
SGKCWRFRYS YWNSSQSYVL TKGWSRYVKD KRLDAGDVVL FERHRVDAQR LFIGWRRRRQ  180
SDAALPPAHV SSRKSGGGDG NSNKNEGWTR GFYSAHHPYP THHLHHHQPS PYQQQHDCLH  240
AGRGSQGQNQ RMRPVGNNSS SSSSSSRVLR LFGVDMECQP EHDDSGPSTP QCSYNSNNML  300
PSTQGTDHSH HNFYQQQPSN SNPSPHHMMV HHQPYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-49661781113B3 domain-containing transcription factor NGA1
5os9_B4e-49661781113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G076100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150418e-87AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537081.10.0B3 domain-containing protein At2g36080
RefseqXP_028183584.10.0B3 domain-containing protein At2g36080-like
SwissprotQ9FNI32e-62Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A445IJF30.0A0A445IJF3_GLYSO; B3 domain-containing protein
TrEMBLK7LHY60.0K7LHY6_SOYBN; Uncharacterized protein
STRINGGLYMA10G08871.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.27e-62B3 family protein