PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G077000.1.p
Common NameGLYMA_10G077000, LOC100802373
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 129aa    MW: 14785.9 Da    PI: 9.8487
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G077000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.84.8e-41111281120
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFh + eel+v+yL++kv++++l++ ++i+e+d+y+++Pw+Lp+ +  +e+ewyfF++rd+ky++g r+nrat+sgyWk tg+dk
  Glyma.10G077000.1.p  11 LPPGFRFHLSYEELIVHYLRNKVTSSPLPA-SFIAEIDLYNYNPWELPTLF--GEDEWYFFTPRDRKYPNGVRPNRATTSGYWKPTGTDK 97 
                          79****************************.89***************544..789********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektd 120
                          +++++ + + + +kk Lvfykgr pkg+ktd
  Glyma.10G077000.1.p  98 PIFTScGMKSITVKKALVFYKGRPPKGSKTD 128
                          ****977788*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-448128IPR003441NAC domain
PROSITE profilePS5100544.85711128IPR003441NAC domain
PfamPF023656.1E-1812120IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MDKDANSKIQ LPPGFRFHLS YEELIVHYLR NKVTSSPLPA SFIAEIDLYN YNPWELPTLF  60
GEDEWYFFTP RDRKYPNGVR PNRATTSGYW KPTGTDKPIF TSCGMKSITV KKALVFYKGR  120
PPKGSKTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4821286132Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}.
UniprotTISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G077000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354605e-89AC235460.1 Glycine max strain Williams 82 clone GM_WBb0169H15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589858.11e-91NAC transcription factor 25
SwissprotQ8GY422e-57NAC25_ARATH; NAC transcription factor 25
TrEMBLI1L9H43e-90I1L9H4_SOYBN; Uncharacterized protein
STRINGGLYMA10G09180.15e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.17e-60NAC domain containing protein 25