PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G077400.1.p
Common NameGLYMA_10G077400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 137aa    MW: 15780 Da    PI: 9.9029
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G077400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.75.9e-46111361125
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          lppGfrFh + eel+v+yL++kv+++++++ ++i+e+d+y+++Pw+Lp  k+  +e+ewyfF++rd+ky++g r+nr ++sgyWkatg++
  Glyma.10G077400.1.p  11 LPPGFRFHLSHEELIVHYLRNKVTSSPIPA-SFIAEIDLYNYNPWELPsFKTLFGEDEWYFFTPRDRKYPNGVRPNREATSGYWKATGTN 99 
                          79****************************.89***************656667999********************9999********* PP

                  NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmhe 125
                          k+++++ + + + +kk Lvfykgr +kg+kt+W+mhe
  Glyma.10G077400.1.p 100 KPIFTScGMKSITVKKALVFYKGRPSKGSKTNWIMHE 136
                          ****9977788*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-498136IPR003441NAC domain
PROSITE profilePS5100550.00611136IPR003441NAC domain
PfamPF023651.4E-2212136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDKDANSVIQ LPPGFRFHLS HEELIVHYLR NKVTSSPIPA SFIAEIDLYN YNPWELPSFK  60
TLFGEDEWYF FTPRDRKYPN GVRPNREATS GYWKATGTNK PIFTSCGMKS ITVKKALVFY  120
KGRPSKGSKT NWIMHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-5221366137Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}.
UniprotTISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}.
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G077400.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354604e-99AC235460.1 Glycine max strain Williams 82 clone GM_WBb0169H15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627676.12e-85NAC transcription factor 25 isoform X1
SwissprotD2SMN41e-61NAMB1_HORVS; NAC transcription factor NAM-B1
SwissprotQ8GY427e-62NAC25_ARATH; NAC transcription factor 25
TrEMBLK7LHZ31e-97K7LHZ3_SOYBN; Uncharacterized protein
STRINGGLYMA10G09246.12e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-64NAC domain containing protein 25
Publications ? help Back to Top
  1. Jamar C, et al.
    NAM-1gene polymorphism and grain protein content in Hordeum.
    J. Plant Physiol., 2010. 167(6): p. 497-501
    [PMID:20005003]