PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G085900.1.p
Common NameGLYMA_10G085900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19797.9 Da    PI: 10.5396
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G085900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.21.6e-212168249
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +  n+sn  vtfskRr+g++KKA+EL +LC+++vavi+fs+ ++++ +
  Glyma.10G085900.1.p 21 KMRNESNLRVTFSKRRTGVFKKASELATLCGVDVAVIMFSPGNRVFSF 68
                         5689****************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-301271IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.4461272IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-271391IPR002100Transcription factor, MADS-box
CDDcd002654.43E-331382No hitNo description
PRINTSPR004041.6E-181434IPR002100Transcription factor, MADS-box
PfamPF003193.0E-232268IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-183449IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-184970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MPDLNGVAKK TKGRQKIEMK KMRNESNLRV TFSKRRTGVF KKASELATLC GVDVAVIMFS  60
PGNRVFSFGS PSVDSVVQRY KTQGPPPLLT LDLNKVHSTA DEVELHTHLH CLSNQIAIEK  120
KRTKDLNHLA KAAEDQFWWA RPIESMTDSQ LDKYKKMLEE FKRQLKEKRG NLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A4e-161386174MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B4e-161386174MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C4e-161386174MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D4e-161386174MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A4e-161386174Myocyte-specific enhancer factor 2A
3kov_B4e-161386174Myocyte-specific enhancer factor 2A
3kov_I4e-161386174Myocyte-specific enhancer factor 2A
3kov_J4e-161386174Myocyte-specific enhancer factor 2A
3p57_A4e-161386174Myocyte-specific enhancer factor 2A
3p57_B4e-161386174Myocyte-specific enhancer factor 2A
3p57_C4e-161386174Myocyte-specific enhancer factor 2A
3p57_D4e-161386174Myocyte-specific enhancer factor 2A
3p57_I4e-161386174Myocyte-specific enhancer factor 2A
3p57_J4e-161386174Myocyte-specific enhancer factor 2A
6c9l_A5e-161386275Myocyte-specific enhancer factor 2B
6c9l_B5e-161386275Myocyte-specific enhancer factor 2B
6c9l_C5e-161386275Myocyte-specific enhancer factor 2B
6c9l_D5e-161386275Myocyte-specific enhancer factor 2B
6c9l_E5e-161386275Myocyte-specific enhancer factor 2B
6c9l_F5e-161386275Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}.
UniprotTISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G085900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358430.0AC235843.2 Glycine max clone GM_WBb0059O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589896.11e-128agamous-like MADS-box protein AGL62
RefseqXP_028184649.11e-128agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-42AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A0R0HQX61e-126A0A0R0HQX6_SOYBN; Uncharacterized protein
STRINGGLYMA10G10860.11e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13864521
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-45AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]