PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G086300.1.p
Common NameGLYMA_10G086300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19825 Da    PI: 10.1677
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G086300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.31.5e-212168249
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +  n+sn  vtfskRr+g++KKA+EL +LCd++v vi+fs+ ++++ +
  Glyma.10G086300.1.p 21 KMRNESNLRVTFSKRRTGVFKKASELATLCDVDVTVIMFSPGNRVFSF 68
                         5689****************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-301271IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.741272IPR002100Transcription factor, MADS-box
CDDcd002652.42E-311383No hitNo description
SuperFamilySSF554553.66E-271396IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-191434IPR002100Transcription factor, MADS-box
PfamPF003191.2E-222268IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-193449IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-194970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MPDLNGVAKK TKGRQKIEMK KMRNESNLRV TFSKRRTGVF KKASELATLC DVDVTVIMFS  60
PGNRVFSFGS PSVDSVVQCY KTHVPPPLLT LDLNKVHSTV DEVELHTHLH CLSNQIAIEK  120
KRTKDLNHLA KAAEDQFWWA RPIESMIDSQ LDKYKKMLEE FKRQLKEKGG NLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-151386275Myocyte-specific enhancer factor 2B
1tqe_Q1e-151386275Myocyte-specific enhancer factor 2B
1tqe_R1e-151386275Myocyte-specific enhancer factor 2B
1tqe_S1e-151386275Myocyte-specific enhancer factor 2B
6c9l_A1e-151386275Myocyte-specific enhancer factor 2B
6c9l_B1e-151386275Myocyte-specific enhancer factor 2B
6c9l_C1e-151386275Myocyte-specific enhancer factor 2B
6c9l_D1e-151386275Myocyte-specific enhancer factor 2B
6c9l_E1e-151386275Myocyte-specific enhancer factor 2B
6c9l_F1e-151386275Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G086300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358430.0AC235843.2 Glycine max clone GM_WBb0059O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588890.11e-128agamous-like MADS-box protein AGL62
RefseqXP_028184653.11e-128agamous-like MADS-box protein AGL62
TrEMBLA0A445IJW91e-126A0A445IJW9_GLYSO; Agamous-like MADS-box protein AGL62
TrEMBLI1L9P21e-126I1L9P2_SOYBN; Uncharacterized protein
STRINGGLYMA10G10920.11e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13864521
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-41AGAMOUS-like 62