PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G113800.1.p
Common NameGLYMA_10G113800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 121aa    MW: 13709.2 Da    PI: 9.4941
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G113800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY53.83.9e-172863236
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EE CS
                 WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkk 36
                         +D y+WrKYG+K+ ++++ pr+Y++C++a +Cpv k
  Glyma.10G113800.1.p 28 RDRYQWRKYGKKVTRDNPSPRAYFKCSYApSCPVNK 63
                         7***************************99****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081114.8372263IPR003657WRKY domain
SuperFamilySSF1182902.48E-142564IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-152563IPR003657WRKY domain
SMARTSM007744.3E-82785IPR003657WRKY domain
PfamPF031062.3E-122963IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MPSQIFMCKI NLLGPITQSI ALLTEYVRDR YQWRKYGKKV TRDNPSPRAY FKCSYAPSCP  60
VNKFDLYDLF PRIMLITDSV MSHLSQVQSQ IEQPILSPLI INMGKIACWG GGCFILGTKI  120
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G113800.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150356e-36AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240986.19e-20WRKY transcription factor 17
RefseqXP_028235171.19e-20probable WRKY transcription factor 40
TrEMBLI1L9Z33e-84I1L9Z3_SOYBN; Uncharacterized protein
STRINGGLYMA10G13720.15e-85(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.13e-19WRKY DNA-binding protein 18