PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G116600.2.p
Common NameGLYMA_10G116600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 404aa    MW: 44501.1 Da    PI: 9.3237
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G116600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-17156205155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Glyma.10G116600.2.p 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDRAAIKFRG 205
                          78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-16156214IPR016177DNA-binding domain
CDDcd000184.74E-12156212No hitNo description
PfamPF008471.8E-9156205IPR001471AP2/ERF domain
SMARTSM003808.7E-32157219IPR001471AP2/ERF domain
PROSITE profilePS5103217.794157213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-17157214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAMFDLNVDI NHGDADADSS CDQKGLQLQS FPPEISASRT ANSSVWNPAE DDSSNNSSPL  60
IFDILKKERD KSEFDAATER VNKEAEIVTR TLFPVTAAAA ADNGARVPDF KLGLWGKTQC  120
LNLCLPEPDG QNGLRTLQQK LPHVRKNRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAQ AAARAYDRAA IKFRGVEADI NFSLSDYEED LKQMRGLSKE EFVLLLRRQI  240
NGSSRSSTYK GALALRKDAQ GEPRRAPFIG KTFYPNSSIK CDDGKVDASF KPCSYKGEII  300
ANSSMAGISP SSKRLKNDYS GGYSFGCMAS LACKIPKERG TMEKAMVDRI RNVPLQKISN  360
LAWQLCSNGS SIVPRPLQPN AASSGFVSSS SCLITDTSNQ HKY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.349410.0cotyledon
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G116600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310710.0KT031071.1 Glycine max clone HN_CCL_188 AP2-EREBP transcription factor (Glyma02g09600.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535179.10.0AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_028183212.10.0AP2-like ethylene-responsive transcription factor TOE3
SwissprotB8B0I84e-51AP24_ORYSI; APETALA2-like protein 4
TrEMBLA0A0R0HS490.0A0A0R0HS49_SOYBN; Uncharacterized protein
STRINGGLYMA10G22390.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.13e-50target of early activation tagged (EAT) 2