PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G126900.1.p
Common NameGLYMA_10G126900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 257aa    MW: 28288.6 Da    PI: 8.1639
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G126900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.55.1e-20186220135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg+ kTp+WR gp+g+ktLCnaCG+++++ +l
  Glyma.10G126900.1.p 186 CQHCGAEKTPQWRAGPSGPKTLCNACGVRFKSGRL 220
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.519180216IPR000679Zinc finger, GATA-type
SMARTSM004019.3E-18180230IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-14182243No hitNo description
Gene3DG3DSA:3.30.50.102.5E-15184218IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.54E-14185232No hitNo description
PROSITE patternPS003440186211IPR000679Zinc finger, GATA-type
PfamPF003201.8E-17186220IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MCKHDFLSLS RMETIGSVDD LLDFSSDIGE EDDYDDKPRK ACPSLNSKCA GPSLFNPLVQ  60
VDPNHSFSEF AEEELEWLSN KDAFPSVETF VDLSSIQPGT TKNQKSAPVL ECSTGSSNSN  120
NSTNSISLLN SCDHLKVPVR ARSKSRSRHR PGLAENSSQQ VWWRQPSNGT SKADEGMKIS  180
SIGRKCQHCG AEKTPQWRAG PSGPKTLCNA CGVRFKSGRL VPEYRPASSP TFHSDLHSNS  240
HRKIVEMRRQ KQMGMG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G126900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0972870.0BT097287.1 Soybean clone JCVI-FLGm-16E7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025979745.10.0GATA transcription factor 1-like isoform X1
SwissprotQ8LAU93e-49GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A0R0I1E40.0A0A0R0I1E4_SOYBN; Uncharacterized protein
STRINGGLYMA10G25480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-49GATA transcription factor 1