PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G138300.2.p
Common NameGLYMA_10G138300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 346aa    MW: 37224.3 Da    PI: 8.2877
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G138300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-30120178259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK  kg+++pr+YYrCt+a gCpv+k+v+r+ +d++v+++tYeg+Hnh+
  Glyma.10G138300.2.p 120 SDGCQWRKYGQKIAKGNPCPRAYYRCTMAvGCPVRKQVQRCMDDKTVLITTYEGNHNHP 178
                          7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-32104180IPR003657WRKY domain
SuperFamilySSF1182909.29E-28112180IPR003657WRKY domain
PROSITE profilePS5081129.964114180IPR003657WRKY domain
SMARTSM007742.4E-35119179IPR003657WRKY domain
PfamPF031061.1E-26121178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MLDQITKNYN QLQLFIALQK QKQCQKMETN LNGMMFGQHL LDPRGPFTKL DAQVAPFPDD  60
KSGQRGHPET DPVEDVLEQS TSQSWGSSKS PKFEESNSSE LPLKKTRVSV RARSEAPLIS  120
DGCQWRKYGQ KIAKGNPCPR AYYRCTMAVG CPVRKQVQRC MDDKTVLITT YEGNHNHPLP  180
PSAIVMANST SAAASMFLSS SCSTSNNNEA LSNTVGVFSS MPYIPMATLS TSAPFPTITL  240
DMTTNPSALT SPLPLHATTF PQLLGHPVIF PHKMPHPLLG QQQPLFTTET MSAAIASNPN  300
FTIALAAAIS SIIGAPRGND GINNNSSNGG SDLPLNGTSM LPGST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-22110180877Probable WRKY transcription factor 4
2lex_A5e-22110180877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.367710.0cotyledon
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G138300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195520.0EU019552.1 Glycine max WRKY1 (WRKY1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535298.20.0probable WRKY transcription factor 47 isoform X2
SwissprotQ9XEC31e-73WRK42_ARATH; WRKY transcription factor 42
TrEMBLK7LJA30.0K7LJA3_SOYBN; Uncharacterized protein
TrEMBLK7LJA50.0K7LJA5_SOYBN; Uncharacterized protein
STRINGGLYMA10G27860.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-73WRKY family protein