PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G144700.1.p
Common NameGLYMA_10G144700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 128aa    MW: 14475.5 Da    PI: 8.7221
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G144700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.2e-105276226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                          ++lC +f  tG+C+yGd+Ck+ H+
  Glyma.10G144700.1.p 52 NRPLCFHFVNTGFCRYGDSCKYLHP 76
                         689*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.13E-16450No hitNo description
PfamPF062201.9E-10439IPR013085Zinc finger, U1-C type
PROSITE profilePS5010316.6625078IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-85179IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-65177IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-85276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-75575IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MPVKKYYCDY CDKLFQDTPA DRKRHVQGIQ HHQAKARWYD SFKQQQIPPI PNRPLCFHFV  60
NTGFCRYGDS CKYLHPVPNN NVQQPPIVTT PSPSPGSVVG VSFGNLPPSL QPPPDGVYLH  120
LPFLDWG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.127070.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G144700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0920280.0BT092028.1 Soybean clone JCVI-FLGm-9K20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236361.24e-90putative U1 zinc finger protein
RefseqXP_028182862.14e-90zinc finger CCCH domain-containing protein 3 isoform X2
SwissprotQ0JP112e-37C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A445IME82e-89A0A445IME8_GLYSO; Zinc finger CCCH domain-containing protein 3 isoform B
TrEMBLA0A445IMJ21e-89A0A445IMJ2_GLYSO; Zinc finger CCCH domain-containing protein 3 isoform C
STRINGGLYMA10G28540.12e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Representative plantOGRP85391213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-26C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]