PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G161200.1.p
Common NameGLYMA_10G161200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 582aa    MW: 67074.6 Da    PI: 6.7706
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G161200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.81.2e-1797175286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          Wt +evl+L+++r++me+++ +       We+vs+k++e g++rs+++Ckek+e+ ++++ +  + +k++ ++s+s+++++++le
  Glyma.10G161200.1.p  97 WTTDEVLTLLRIRSSMESWFPEL-----TWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNNINYAKNN-NNSTSNYRFLSELE 175
                          ********************987.....9*********************************99999986.78888******998 PP
2trihelix90.32e-28428517186
             trihelix   1 rWtkqevlaLiearr.....emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          rW+k+evlaLi++r      + +++ ++g+ k plWe++s+ m+e  ++rs+k+Ckekwen+nk+++k+k++ kkr s +s+tcpyf+ql
  Glyma.10G161200.1.p 428 RWPKDEVLALINLRCtsvnnNNNNEEKEGNNKVPLWERISQGMSELRYKRSAKRCKEKWENINKYFRKTKDITKKR-SLDSRTCPYFHQL 516
                          8*************8544434444444688*********************************************8.9999********9 PP

             trihelix  86 e 86 
                           
  Glyma.10G161200.1.p 517 S 517
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-1295176No hitNo description
PROSITE profilePS500906.34296148IPR017877Myb-like domain
PfamPF138371.1E-18427518No hitNo description
CDDcd122039.39E-20427497No hitNo description
PROSITE profilePS500906.237428490IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MFDGVPDQFH QFITPRTSQP LHLPFPLHAS GTPNTTFPSN FDPYNNPSHQ LPLQPNNLLH  60
PLHHKDEEKE ENTTTVPMNF EIQRDQRQQL PELIDPWTTD EVLTLLRIRS SMESWFPELT  120
WEHVSRKLAE LGYKRSAEKC KEKFEEESRY FNNNINYAKN NNNSTSNYRF LSELEQLYHQ  180
QGSSGDHLEK MTQPPLQKQG RMDHHALELE EEEGDSRNVI VDASVTKIQS DEALAVEKIT  240
KDRKRKRSDR FEMFKGFCES IVHKMMTQQE EMHNKLLEDM MKRDEEKFTR EEAWKKQEME  300
KMNKELEMMA REQAVAGDRQ AKIIQILNKF SATTSSPASH TLKKVNTHIS QNPNPSQTEN  360
PTLSVAQDTL IPSTSSTSTP APAPPQNPSS CSLNSQNNNH INNNIPVEKN SILNKGSSSN  420
EKDDVGRRWP KDEVLALINL RCTSVNNNNN NEEKEGNNKV PLWERISQGM SELRYKRSAK  480
RCKEKWENIN KYFRKTKDIT KKRSLDSRTC PYFHQLSSLY NQGKLVLQSE SHLNNTPPDQ  540
NPEQVKPDQT TQAHESSSQV GSGSGFSVQQ QQVPSLDFDQ F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.262150.0cotyledon| flower| hypocotyl| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G161200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2217540.0EF221754.1 Glycine max trihelix transcription factor (GT-2B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028185826.10.0trihelix transcription factor GTL2-like
TrEMBLA0A445INB60.0A0A445INB6_GLYSO; Trihelix transcription factor GTL2
TrEMBLI1LBK50.0I1LBK5_SOYBN; Uncharacterized protein
STRINGGLYMA10G30300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Representative plantOGRP1061159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-81Trihelix family protein