PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G162300.2.p
Common NameGLYMA_10G162300, LOC100781299
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 328aa    MW: 35656.3 Da    PI: 6.6603
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G162300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-09176220554
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Glyma.10G162300.2.p 176 HSIAERLRRERIAERMKALQELVPSiN------KTDRAAMLDEIVDYVKFL 220
                          99***********************77......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.59E-10169225No hitNo description
SuperFamilySSF474593.79E-15169230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.126171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14173231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-7176220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-11177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAGNSSSEGL VDDFFEQILA VPEAAAFRGA AGLMPLGLNL EQAGFLRHQH QINVDDVVHV  60
NVDDATIHHH HLTLHNNTTS SSPSSTAPIT DRDSMHMRGL FSAFGQLHTP TLAHSIRPTL  120
PSPPPPRQPQ LHLHHHNNQQ FQGQPAAAPA SMAAMPQPPG IRPRVRARRG QATDPHSIAE  180
RLRRERIAER MKALQELVPS INKTDRAAML DEIVDYVKFL RLQVKVLSMS RLGGAGAVAQ  240
LVADVPLSAV EGDQDIEGVS NEQAWDKWSN DGTEQQVAKL MEEDVGAAMQ FLQSKALCIM  300
PISLASSIFR MPQSEASTGI KPESNSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.50540.0epicotyl| hypocotyl| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G162300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1416381e-174BT141638.1 Lotus japonicus clone JCVI-FLLj-6C12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589182.10.0transcription factor UNE12 isoform X2
SwissprotO227683e-76UNE12_ARATH; Transcription factor UNE12
TrEMBLI1LBL70.0I1LBL7_SOYBN; Uncharacterized protein
STRINGGLYMA10G30430.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]