PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.10G171100.1.p

Common Name

GLYMA_10G171100, LOC102666270

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 193aa MW: 21670.8 Da PI: 6.51

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G171100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	79	5.2e-25	130	188	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+W YG K++kg+ fpr YY+C+sagC+++k+v+r++ ++k v++tY g+Hnhe Glyma.10G171100.1.p 130 VDDGYQWHQYGLKTMKGNLFPRVYYKCASAGCCARKEVDRNSVNTKHVITTYVGKHNHE 188 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.7E-25	125	190	IPR003657	WRKY domain
PROSITE profile	PS50811	27.106	125	190	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-22	126	190	IPR003657	WRKY domain
SMART	SM00774	1.1E-22	130	189	IPR003657	WRKY domain
Pfam	PF03106	5.2E-20	131	188	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MDFSNASPSP TQVDQQNDEK KVKVSLSFDL NSKPEEEEEE PISFSEEARA KVGGGCETRG 60 ASTSEPDDHI QQVALPTDAA HNHRVNIVDP ESHSQNRKRK RSDNRGMGSV FRRETFVLPF 120 ETQSETVIFV DDGYQWHQYG LKTMKGNLFP RVYYKCASAG CCARKEVDRN SVNTKHVITT 180 YVGKHNHEPP TN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-20	120	190	8	77	Probable WRKY transcription factor 4
2lex_A	1e-20	120	190	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G171100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006590168.1	1e-144	WRKY transcription factor 1
TrEMBL	K7LJY0	1e-143	K7LJY0_SOYBN; Uncharacterized protein
STRING	GLYMA10G31396.1	1e-144	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13960.1	1e-21	WRKY DNA-binding protein 4

Link Out ? help Back to Top
Phytozome	Glyma.10G171100.1.p
Entrez Gene	102666270