PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G184500.1.p
Common NameGLYMA_10G184500, LOC102669921
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 161aa    MW: 18301.3 Da    PI: 6.8779
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G184500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000121638123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C++ F++   L  H++ H
  Glyma.10G184500.1.p 16 YECTFCKRGFTNAQALGGHMNIH 38
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.1E-51341IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.63E-71343No hitNo description
SMARTSM003550.00971638IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4681643IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MILIQEDDTG GTKRSYECTF CKRGFTNAQA LGGHMNIHRR DRAKAKQFTL DASPSVNKFN  60
SNNNDSMALP FVSEIMNQPT RPNYSPLESQ MNFHPPHAFY YEFCNSRSQP LSLNNQELRD  120
ANLSLQIGSS HVDDNIHQVR RGNQKESEVD LELRLGHDPY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13846RRDRAKAKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G184500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-68AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590179.11e-118transcriptional regulator TAC1
TrEMBLI1LC921e-117I1LC92_SOYBN; Uncharacterized protein
STRINGGLYMA10G32810.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.17e-17C2H2 family protein