PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G192000.5.p
Common NameGLYMA_10G192000, LOC100815883, NF-YB1a, NF-YB1b
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 175aa    MW: 18919.2 Da    PI: 6.1185
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G192000.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.14.5e-5727122297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          reqdr+lPian+srimkk+lP n+ki+kdak+t+qecvsefisf+tseas+kcq+ekrktingddllwa+atlGfedy+eplkvyl++yr
  Glyma.10G192000.5.p  27 REQDRYLPIANISRIMKKALPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYR 116
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          e+eg++
  Glyma.10G192000.5.p 117 EAEGDT 122
                          ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-5426136IPR009072Histone-fold
SuperFamilySSF471132.02E-4129142IPR009072Histone-fold
PfamPF008082.8E-293296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.2E-216078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.2E-217997No hitNo description
PRINTSPR006152.2E-2198116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MSDAPASPSH ESGGEQSPRG SLSGAAREQD RYLPIANISR IMKKALPPNG KIAKDAKDTM  60
QECVSEFISF ITSEASEKCQ KEKRKTINGD DLLWAMATLG FEDYIEPLKV YLARYREAEG  120
DTKGSARSGD GSARPDQVGL AGQNAQLVHQ GSLNYIGLQV QPQHLVMPSM QGHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4927117292Transcription factor HapC (Eurofung)
4g92_B6e-4927117292Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.194370.0cotyledon| flower| hypocotyl| leaf| pod| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G192000.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7755290.0FJ775529.1 Glycine max CCAAT-binding transcription factor family protein (NF-YB1a) mRNA, complete cds.
GenBankFJ7755300.0FJ775530.1 Glycine max CCAAT-binding transcription factor family protein (NF-YB1b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239681.11e-128nuclear transcription factor Y subunit B-8-like
RefseqXP_006588494.11e-128nuclear transcription factor Y subunit B-8-like isoform X1
RefseqXP_028182182.11e-128nuclear transcription factor Y subunit B-1-like
RefseqXP_028182183.11e-128nuclear transcription factor Y subunit B-1-like
SwissprotQ8VYK42e-75NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0B2RAX71e-126A0A0B2RAX7_GLYSO; Nuclear transcription factor Y subunit B-8
TrEMBLA0A445IPR01e-125A0A445IPR0_GLYSO; Nuclear transcription factor Y subunit B-8 isoform A
TrEMBLE0WC421e-126E0WC42_SOYBN; CCAAT-binding transcription factor family protein
STRINGGLYMA10G33550.21e-127(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.39e-78nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]