PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G193400.1.p
Common NameGLYMA_10G193400, LOC100819431
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 388aa    MW: 42198.2 Da    PI: 9.011
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G193400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19222271356
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +kGVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+ge
  Glyma.10G193400.1.p 222 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 271
                          8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.16E-30220280No hitNo description
PROSITE profilePS5103222.049221278IPR001471AP2/ERF domain
SMARTSM003802.0E-33221284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-31221279IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-22221279IPR016177DNA-binding domain
PRINTSPR003675.5E-10222233IPR001471AP2/ERF domain
PfamPF008471.0E-11222271IPR001471AP2/ERF domain
PRINTSPR003675.5E-10244260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MATGSKFLDN AIIRGHSHFL TASNHLHVLK SGANSSIASS PENLFSCSNP TSMKEEAPLA  60
TWISHIPAKF NVHQDIKNGK EKNQSNSIFP ASDTKNSSIP LNLLETLPPL TIAPCFDEPV  120
TSLASSSAIP KFPNLTLFLQ EPSMVYSSIS SSNIKGGEVM SATSDPSYHV SQFVQNQHQA  180
GSGDAHKMNK SLSNSQSKSF DENWLSATRT QPMKNGGRGK LFKGVRQRHW GKWVAEIRLP  240
RNRTRVWLGT FDTAEDAAIA YDTAAYILRG EYAQLNFPDL KHVIQANSLN GTTAALVEAK  300
LQAISKGGSS HRKPTDSPPG SSNKHNDENG KLKSISGKDS SIRLGAEITE RSKSTHHETS  360
DVEGVQLSRM PSLDMDIIWD ELFVSNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20217278163ATERF1
3gcc_A1e-20217278163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G193400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310950.0KT031095.1 Glycine max clone HN_CCL_19 AP2-EREBP transcription factor (Glyma20g33890.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014618768.10.0ethylene-responsive transcription factor ERF062
TrEMBLI1LCI20.0I1LCI2_SOYBN; Uncharacterized protein
STRINGGLYMA10G33700.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Representative plantOGRP1128257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.14e-57ERF family protein