PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G197600.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 449aa    MW: 49659.4 Da    PI: 4.2623
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G197600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.27.1e-32597293
                  NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
                          pGfrFhPtdeelvv+yLk+k++g+  +  ++i+ vd+yk+ePwdLp  +k+k+++ ewyfFs  d+ky +g r+nrat++gyW++tg ++ 
  Glyma.10G197600.1.p  5 GPGFRFHPTDEELVVFYLKRKMTGNLSRY-DHIAVVDVYKLEPWDLPslSKLKTKDLEWYFFSALDRKYGNGYRTNRATERGYWNQTGIEHF 95
                         59***********************9888.89***************5448888888*******************************9887 PP

                  NAM 92 vl 93
                         v+
  Glyma.10G197600.1.p 96 VH 97
                         76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-33397IPR003441NAC domain
PROSITE profilePS5100530.7054150IPR003441NAC domain
PfamPF023654.2E-15693IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MARMGPGFRF HPTDEELVVF YLKRKMTGNL SRYDHIAVVD VYKLEPWDLP SLSKLKTKDL  60
EWYFFSALDR KYGNGYRTNR ATERGYWNQT GIEHFVHADL FMYLSSFMRY VVLALELDWS  120
GIIDSDTLPS LNFHYGECSS HAEYSKVFIK DQEPLADTFE ISCPENVWPL DMTGQHGVGT  180
NSGEDGDSGE LSNIGNFDLS SNNMNLDLYW DANENLPMDD DGFLEYNDIA IGNGDNPTEA  240
DLSANAMLDE YAALADDDIY KYISFDSPQI QESENFIPNQ GSPFTQQNVE GETADRAVVS  300
NEGSSVQNTQ EAMLGISTNP LVKQAYGWLA SIPAAPAHAM EFPAKEIALG LHPVAQSSHP  360
AHITTTGMIS ITDITFRDNA MDWTMGKNGG FSTVISTGFS QSDVNSAALM PVSGKTAFVL  420
SHGWIFLTGF SVLILSLSCK IGSIIAYR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-2349615105Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G197600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353361e-159AC235336.1 Glycine max strain Williams 82 clone GM_WBb0084A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184213.10.0NAC domain-containing protein 53
TrEMBLA0A368UHL50.0A0A368UHL5_SOYBN; Uncharacterized protein
STRINGGLYMA20G33390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Representative plantOGRP1057159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.13e-40NAC domain containing protein 52