PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G223800.1.p
Common NameGLYMA_10G223800, LOC100808917
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 248aa    MW: 28176.5 Da    PI: 5.4518
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G223800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.85.4e-14165225362
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklkse 62 
                          + +r+rr++kNRe+A rsR+RK+a++ eLe  + +Le+eN++L k+++e+ kk +++l  +
  Glyma.10G223800.1.p 165 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLlKEKAERKKKRYKQLMEK 225
                          679*************************************997255677777777776555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-8163225IPR004827Basic-leucine zipper domain
PfamPF001701.5E-12165224IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.542165217IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.1E-8167216No hitNo description
CDDcd147071.03E-16167207No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-11168222No hitNo description
PROSITE patternPS000360170185IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MMASSNSRKS ETSPSPAPQF TTTNFIPIPA AAAPKTVDDV WQEIVTGDRR ECKEEALDDD  60
DDDDNEMMTL EDFLAKADAV DDADHDHDHA HDHDPDYHND DVKMPMPLTE RLGSGTLFSF  120
DHLPTTPFHD PSEGSVIGFG NGVEVIECGR GKRSRPVLEQ LDKAAQQRQR RMIKNRESAA  180
RSRERKQAYQ VELESLAVKL EEENDKLLKE KAERKKKRYK QLMEKVLPIA QKQKPPCILR  240
RARSLQW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213220RKKKRYKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G223800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536422.10.0G-box-binding factor 4
RefseqXP_028185890.10.0G-box-binding factor 4-like
SwissprotP427776e-50GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A445IR810.0A0A445IR81_GLYSO; G-box-binding factor 4 isoform A
TrEMBLK7LKW00.0K7LKW0_SOYBN; Uncharacterized protein
STRINGGLYMA10G36820.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Representative plantOGRP8662715
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.14e-43bZIP family protein