PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G225300.1.p
Common NameGLYMA_10G225300, LOC100812134
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 445aa    MW: 50751.6 Da    PI: 6.7103
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G225300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.99.8e-27120214183
             trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                          +Wt+++v++Li+a+++++e++ ++            +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++
  Glyma.10G225300.1.p 120 KWTDKMVKLLITAVSYIGEDVTADGgssgrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVEN 209
                          7******************99986445677888899**********************************************55888888 PP

             trihelix  79 cpyfd 83 
                           +++d
  Glyma.10G225300.1.p 210 PVLLD 214
                          77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.6E-24118243No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEGNLPQGGI IQGGTSFGGF DLPGSIRVQH QAQHPHSMHQ HQTHPRQGSS VHSAVHDGFP  60
LTMGTMQNCD QTISLADFSK GDRSKNSASE EDEPSYTEDG VDCHHETTRG KKGSPWQRVK  120
WTDKMVKLLI TAVSYIGEDV TADGGSSGRR KFAVLQKKGK WKSVSKVMAE RGYHVSPQQC  180
EDKFNDLNKR YKKLNDMLGR GTSCQVVENP VLLDVIDFLS EKEKDDVRKI LSSKHLFYEE  240
MCSYHNGNRL HLPHDPALQR SLQLALRNRD DHDDDMRRSH HDEDDQDVEI DDHDDFEENC  300
ASHGDSRGIY GPLGGSMKKL KQCQGQEDAN TFGNSLNCQD YNKSSYPHGQ MIPSDVNQGL  360
PEGMKAAWLQ KQWVESRTLQ LEEQKLQIQV EMLELEKQRF KWQRFSKKKD RELEKLSLEN  420
ERMKLENERI SLELKRKEMG TGFK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.83880.0epicotyl| flower| leaf| pod| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G225300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536428.10.0uncharacterized protein LOC100812134
RefseqXP_028184280.10.0uncharacterized protein LOC114371077
TrEMBLA0A445IRA20.0A0A445IRA2_GLYSO; Uncharacterized protein
TrEMBLI1LDG70.0I1LDG7_SOYBN; Uncharacterized protein
STRINGGLYMA10G36980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-166sequence-specific DNA binding transcription factors