PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G240900.3.p
Common NameGLYMA_10G240900, LOC100802197
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26297.9 Da    PI: 9.2633
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G240900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.42.2e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +ri+nk+nrqvtfskRrng+lKKA+ELSvLCdae+a++ifss+gkl+ yss
  Glyma.10G240900.3.p  9 ERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALVIFSSRGKLFQYSS 59
                         69***********************************************96 PP
2K-box62.22e-21841671497
                K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          + +++qel  L+ + e+Lqr+qR+llGe+Le+Ls+keL++Le+qL++ l + R++ ++ l++ i+el  k ++l+++nk L+++
  Glyma.10G240900.3.p  84 EHQSEQELLVLRVKHESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLAQARKHLTQKLVSRIDELHGKVHSLEQANKHLESQ 167
                          446789***************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.216161IPR002100Transcription factor, MADS-box
CDDcd002659.67E-40272No hitNo description
SuperFamilySSF554553.01E-31274IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-1883166IPR002487Transcription factor, K-box
PROSITE profilePS5129712.93884178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRGKVVLER IQNKINRQVT FSKRRNGLLK KAFELSVLCD AEIALVIFSS RGKLFQYSST  60
DINRIIEKYR QCCFNMSQTG DVAEHQSEQE LLVLRVKHES LQRTQRNLLG EELEPLSMKE  120
LHSLEKQLDR TLAQARKHLT QKLVSRIDEL HGKVHSLEQA NKHLESQERG KCTQICEGSP  180
NGHILQDKQV NQFEYGTAGS FRLQQEQTTA SKGKEIETIE DWLRPKQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-25169169MEF2C
5f28_B4e-25169169MEF2C
5f28_C4e-25169169MEF2C
5f28_D4e-25169169MEF2C
6byy_A4e-25169169MEF2 CHIMERA
6byy_B4e-25169169MEF2 CHIMERA
6byy_C4e-25169169MEF2 CHIMERA
6byy_D4e-25169169MEF2 CHIMERA
6bz1_A5e-25169169MEF2 CHIMERA
6bz1_B5e-25169169MEF2 CHIMERA
6bz1_C5e-25169169MEF2 CHIMERA
6bz1_D5e-25169169MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.288030.0meristem| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the floral meristem, lodicule, palea, lemma, receptacle, empty glume, stamen, pistil, and ovule. {ECO:0000269|PubMed:19820190}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G240900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0987530.0BT098753.1 Soybean clone JCVI-FLGm-12N24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589572.11e-167MADS-box transcription factor 17 isoform X3
SwissprotQ7XUN25e-60MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLA0A0R0HYF71e-166A0A0R0HYF7_SOYBN; Uncharacterized protein
STRINGGLYMA10G38580.11e-164(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.13e-58MIKC_MADS family protein
Publications ? help Back to Top
  1. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  2. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  3. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]