PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G254700.1.p
Common NameLOC100794229
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 248aa    MW: 26765.8 Da    PI: 7.2738
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G254700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.14.2e-22247449
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +n++n qvtfskRr g++KKA+EL++LC+a+va+++fs+  k++ +
  Glyma.10G254700.1.p  2 SNDINLQVTFSKRRSGLFKKASELCTLCGANVALVVFSPGEKVFSF 47
                         79**************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.17151IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-22150IPR002100Transcription factor, MADS-box
CDDcd002653.04E-30161No hitNo description
SuperFamilySSF554556.02E-24272IPR002100Transcription factor, MADS-box
PfamPF003194.6E-23247IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-101328IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-102849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSNDINLQVT FSKRRSGLFK KASELCTLCG ANVALVVFSP GEKVFSFGHP SVDGVIERYL  60
KRGPPPEAGN MHYMAKVIEL HGQLTHINDQ LEAERKHAEK LNRKQKEAEA QLWWARPVEG  120
MIIMENLEKL KKAFEELKQQ VAGLADMALS QSVANGNPGH QFFPGASSSA IPNVVLQPTS  180
LPVVQVLPPV THMMLPPPPM MFQNYTLPDH GSMIMNPNGF NNDMGMGGGG AFGVPGPSSA  240
GAGGDFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G254700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535674.10.0agamous-like MADS-box protein AGL62
TrEMBLA0A0R0I6S80.0A0A0R0I6S8_SOYBN; Uncharacterized protein
STRINGGLYMA10G40070.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-39AGAMOUS-like 62