PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G257900.1.p
Common NameGLYMA_10G257900, LOC100806788
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 258aa    MW: 27518.2 Da    PI: 7.3273
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G257900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001188110123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k F++   L  H  +H
  Glyma.10G257900.1.p  88 HRCTVCNKAFPSYQALGGHKASH 110
                          79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.22E-988110No hitNo description
SMARTSM003550.01988110IPR015880Zinc finger, C2H2-like
PfamPF139127.3E-1488112IPR007087Zinc finger, C2H2
PROSITE profilePS501579.22488115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SuperFamilySSF576675.22E-9140167No hitNo description
SMARTSM003550.19145167IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-13145169IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411145167IPR007087Zinc finger, C2H2
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MALEALNSPT AATTPFRGYQ EEEEEVDLHL REPWAKRKRS KRPRFESEEE YLALCLIMLA  60
QSGNNNNTQL PSSSQSHKEA SPPLKLSHRC TVCNKAFPSY QALGGHKASH RKASSESNTT  120
ASAVAVSATA NDSVSASTVG GGRMHECSIC HKSFPTGQAL GGHKRCHYDG GNNHSNSNAN  180
GNNSSGVTTS DGGAASSSSH AFRGFDLNLP APLTEFWSPA GFDFGKKKVG VEQEVESPLP  240
VTAKRPRLFS GEDNEEA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.311080.0cotyledon| flower| hypocotyl| leaf| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G257900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7438880.0JQ743888.1 Glycine max C2H2-type zinc finger protein (STF-2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536582.10.0zinc finger protein ZAT10
SwissprotQ9SSW13e-49AZF1_ARATH; Zinc finger protein AZF1
TrEMBLI1LEF10.0I1LEF1_SOYBN; Uncharacterized protein
STRINGGLYMA10G40400.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-40zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]