PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G281100.1.p
Common NameGLYMA_10G281100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 387aa    MW: 45727.9 Da    PI: 7.5618
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G281100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3352.6e-1112821297
                         HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         ++ rl +p+kf++++           + ++ g++W+v+   +k+ g+++++kGWkeFv+   L++g  + Fk++g+s+    v ++
  Glyma.10G281100.1.p 12 NLERLKIPNKFTSKY-----------IWSLYGNEWKVNW--TKQNGEVWFEKGWKEFVEHYSLDQGRLIFFKYEGTSQI--DVLIL 82
                         446677888887666...........346789*******..********************************997665..56665 PP
2B356.45.5e-18170265198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ff  ++++++ k ++l +p +f++e ++k++    + l  ++ r+W+vk+  +++sg+++l++GW eF k+n+Lk gD +vF+ +++ + 
  Glyma.10G281100.1.p 170 FFIREMHKSYIKYHILAMPGNFITEDQQKEND--HVFLWISEERTWNVKFYPNRCSGQIILGAGWMEFLKDNNLKIGDLCVFEQIKKPGI 257
                          66778899999************999877544..6999999*********55*******************************8888888 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                          +++v +fr
  Glyma.10G281100.1.p 258 SFRVVIFR 265
                          88888887 PP
3B352.11.2e-163093841290
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          +++ +++p +fa++hg++   ++t ++    +rsW vkl+y  k + + lt+GW+eF ++ +Lk+gD++ F+l+++ +f
  Glyma.10G281100.1.p 309 NQNYMSIPIEFARNHGME---NITKVILRVGNRSWPVKLNYYSKHNYCRLTSGWSEFMSQCKLKSGDVCHFELIDKGKF 384
                          45789**********876...35566667799*******888888889************************9986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.885185IPR003340B3 DNA binding domain
CDDcd100174.93E-12383No hitNo description
SuperFamilySSF1019361.28E-17392IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-14385IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-8485IPR003340B3 DNA binding domain
PfamPF023622.5E-81276IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-19164266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-19164265IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-14169265No hitNo description
PfamPF023623.3E-14170265IPR003340B3 DNA binding domain
PROSITE profilePS5086313.211170267IPR003340B3 DNA binding domain
SMARTSM010190.0014171267IPR003340B3 DNA binding domain
PROSITE profilePS5086312.675298387IPR003340B3 DNA binding domain
SMARTSM010194.0E-6302387IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-18302384IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-17306386IPR015300DNA-binding pseudobarrel domain
CDDcd100177.53E-15309387No hitNo description
PfamPF023623.1E-14309384IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
PILFFKVILK TNLERLKIPN KFTSKYIWSL YGNEWKVNWT KQNGEVWFEK GWKEFVEHYS  60
LDQGRLIFFK YEGTSQIDVL ILDQSALEID YPCDTCDEND NLDHTHEAPD IIFGEWPYQK  120
AGQMTGGRRV MYANRRFSKS KAIQNEELLQ NTESSTALER ANYFHSENPF FIREMHKSYI  180
KYHILAMPGN FITEDQQKEN DHVFLWISEE RTWNVKFYPN RCSGQIILGA GWMEFLKDNN  240
LKIGDLCVFE QIKKPGISFR VVIFRDREQS THVDGVNQSK QTGLQNNSKF HRCNNEMLEN  300
DFTLSVKPNQ NYMSIPIEFA RNHGMENITK VILRVGNRSW PVKLNYYSKH NYCRLTSGWS  360
EFMSQCKLKS GDVCHFELID KGKFVFE
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G281100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364811.11e-112B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0R0I0710.0A0A0R0I071_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA20G24222.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14649515
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-22B3 family protein