PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G281300.1.p
Common NameGLYMA_10G281300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 317aa    MW: 36871.2 Da    PI: 9.0376
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G281300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.6e-15105197498
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                            +++ + +++ l +p +f++e ++   e+  + l  +s r W vk+  + +sg+++l+ GW +Fvk+n+Lk gD++vF  +++ + +++
  Glyma.10G281300.1.p 105 CAMRKTYIQRSVLFMPGNFITEDQQR--EDDHVFLWISSERAWHVKFYPSHSSGQILLSIGWMDFVKDNNLKIGDVCVFDQIKKPGISFR 192
                          556667778888999*****988755..555799999**********55999999*************************8888888888 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          v +fr
  Glyma.10G281300.1.p 193 VVIFR 197
                          88887 PP
2B335.41.9e-112363091496
                          T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          + +++pkkf+++h++++ +  +++l+    rsW+vkl  + ++ r  +t+G  +F ++ ++++gD++ F+l+++++f + v+v
  Glyma.10G281300.1.p 236 C-MYVPKKFIRSHEMDHIN--EVKLQV-GKRSWNVKL--DCYG-R--FTSGLHDFLSQCNVEAGDVCHFELIDKKKFVFEVRV 309
                          4.89*********888655..677655.77*******..6665.4..89***********************99999666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-1995198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1896197IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.563102199IPR003340B3 DNA binding domain
SMARTSM010190.03102199IPR003340B3 DNA binding domain
PfamPF023626.0E-12103197IPR003340B3 DNA binding domain
CDDcd100173.06E-11135197No hitNo description
SMARTSM010197.7E-7224311IPR003340B3 DNA binding domain
CDDcd100171.08E-8225311No hitNo description
Gene3DG3DSA:2.40.330.101.1E-11226309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-11235314IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-8236308IPR003340B3 DNA binding domain
PROSITE profilePS508637.81237311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MQYPLMSETL LDGNSICQRK RAKSPFSHSP SIKKVKTNPR KEPANYPSHD VGMWDFFLSF  60
GRFRSKCSGR RRIMCSKSKA IQNTESSTAL ERANSFRSEN PFFICAMRKT YIQRSVLFMP  120
GNFITEDQQR EDDHVFLWIS SERAWHVKFY PSHSSGQILL SIGWMDFVKD NNLKIGDVCV  180
FDQIKKPGIS FRVVIFRDTE ESSPSKFPDS EFRRCNNEVS ENDFTLSISK PCQFYCMYVP  240
KKFIRSHEMD HINEVKLQVG KRSWNVKLDC YGRFTSGLHD FLSQCNVEAG DVCHFELIDK  300
KKFVFEVRVT RCISID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G281300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211029.25e-94B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0R0IAK00.0A0A0R0IAK0_SOYBN; Uncharacterized protein
STRINGGLYMA10G42787.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14649515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-12B3 family protein