PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G285900.1.p
Common NameGLYMA_10G285900, LOC100799005
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 247aa    MW: 26038.1 Da    PI: 10.5886
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G285900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1241.6e-38262022115
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsss 87 
                          a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as++    +    + +a+ +s 
  Glyma.10G285900.1.p  26 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSsvslS----VRAAA-NSL 110
                          78**************************************************************9999977733331....22222.222 PP

                  TCP  88 g..................................................................kaaksaakskksqksaasalnla 111
                          +                                                                  +aa++ +  + sq+++a  + +a
  Glyma.10G285900.1.p 111 SspsstsdhkpqllsptpfilgkrirtdedsskdeavsvgpslvgpstppglwalparpdfgqiwsfAAAAAPEMVSVSQQQQA--SLFA 198
                          223333445566666666666666666666666666666677777777777777776666666665433333333333333333..4444 PP

                  TCP 112 kesr 115
                          +++r
  Glyma.10G285900.1.p 199 HHHR 202
                          4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.2093286IPR017887Transcription factor TCP subgroup
PfamPF036341.6E-3332178IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSNSDATTNG VSNGAIIDAQ RQQALAVKKP PSKDRHSKVD GRGRRIRMPI ICAARVFQLT  60
RELGHKSDGQ TIEWLLRQAE PSIIAATGSG TTPASFSSVS LSVRAAANSL SSPSSTSDHK  120
PQLLSPTPFI LGKRIRTDED SSKDEAVSVG PSLVGPSTPP GLWALPARPD FGQIWSFAAA  180
AAPEMVSVSQ QQQASLFAHH HRQQQQQAIG EASAARVGNY LPGHLNLLAS LSGGPGNSGR  240
RDDEPR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.207450.0cotyledon| hypocotyl| leaf| root| seed coat| somatic embryo
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G285900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536737.11e-178transcription factor TCP7
RefseqXP_028184426.11e-178transcription factor TCP7-like
SwissprotQ9FMX23e-98TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A445IU401e-177A0A445IU40_GLYSO; Transcription factor TCP7
TrEMBLI1LF871e-177I1LF87_SOYBN; Uncharacterized protein
STRINGGLYMA10G43190.11e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Representative plantOGRP85141016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.14e-92TCP family protein